Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1202 ATGTTAGCAGCTAAAACTCATGTAAAAAGTTTAGAATGGGAAGACATGGATAGAGAGCCTAACCAAGAAGATCCACCTCTACTTCCTACCAATAACTCCAAGGAGGACTCTCCTAGAAAGCCACTTGGTGGTGGTAGTAGTGGTGGTGGTGGTGGCGGTGCTGGTGGCGCTGATAGATTGAAAAGAGATGAATGGAGCGAAGGTGCGGTTTCTAGCCTTCTTGAGGCCTATGAGACCAAATGGGTGCTCAGAAATCGCGCCAAGCTCAAGGGCCATGACTGGGAAGAGGTTGCACGCCATGTTTCATCTCGGGCCAATTGTACTAAATCCCCCAAGACTCAAACTCAGTGCAAGAATAAGATCGAGTCCATGAAGAAACGGTACCGGTCTGAGTCTGCCACTCCAGATGCCTCCTCATGGCCTTTGTTTCAGCGCCTTGATCTCTTGCTCCGGGGAAGTGGCGCCCCTCCTATCCCACCTCCAGTAACCACTCCTTTGATGTTGCTTGAAACATTGCCGCCTCAGCCACCCCCTCCGCCGTCTCAGCCTCCTCATACTCTTATGATCACCCAAAACTCCCATGAGTCCAACGGCCTTCATCGGGCTGCCAAGGAAGATGGAGTGGGAACAAAATTGTCTGATCATGCATCAGATAAGGTTGCCATGGAGACGGATAGTAGCACACCGGCCCTCTACAGCGACAAGGAGAAATTGAAGTCCAAGAAAATAAAGATGAGAATAGAGAAGAAGAAGAGGCGAAGAAGGGAAGATTGGGAGGTGGCTGAGAGCATTAGGTGGCTAGCAGAAGTAGTTGTAAGGTCAGAGCAAGCAAGGATGGACACCATGAGAGAGCTGGAGAGGATGAGAGTGGAAGCTGATGCCAAGAGAGGTGAGATGGATCTCAAGCGCACTGAGATCATTGCCAACACTCAGTTGGAGATTGCTAGGCTCTTTGCAGGCAGTGGGAAAGGCGTCGATTCTTCATTGAGAATTGGAAGAAGTTGA 1005 0.5005 MLAAKTHVKSLEWEDMDREPNQEDPPLLPTNNSKEDSPRKPLGGGSSGGGGGGAGGADRLKRDEWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEEVARHVSSRANCTKSPKTQTQCKNKIESMKKRYRSESATPDASSWPLFQRLDLLLRGSGAPPIPPPVTTPLMLLETLPPQPPPPPSQPPHTLMITQNSHESNGLHRAAKEDGVGTKLSDHASDKVAMETDSSTPALYSDKEKLKSKKIKMRIEKKKRRRREDWEVAESIRWLAEVVVRSEQARMDTMRELERMRVEADAKRGEMDLKRTEIIANTQLEIARLFAGSGKGVDSSLRIGRS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1202 334 FunFam Trihelix transcription factor ASIL2 65 130 - -
Vvi13g1202 334 MobiDBLite consensus disorder prediction 1 63 - -
Vvi13g1202 334 MobiDBLite consensus disorder prediction 8 22 - -
Vvi13g1202 334 Pfam Myb/SANT-like DNA-binding domain 62 148 IPR044822 -
Vvi13g1202 334 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 34 320 IPR044823 -
Vvi13g1202 334 Gene3D - 65 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1202 Vvi-Chr13 20024767 20026245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1202 29 173 Trihelix Transcription Factor Family AT3G14180 35.220 1.38e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi13g1202 Myb_DNA-bind_4 7.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1202 - - vvi:100254951 558.14