Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1198 ATGGCTGATTTTGTTGGGGAAGCTATTTTGTCTGGTTTCATCCAGAAACTGATTGACATGGTCAACCCCCCTGAACTCTGGAATTTTGCTAGCGAAGGGCATGTCCATTCTGAGCTTAACAAGTGGAAGAAAATTTTGATGAAGATCTATGCAGTCCTCCATGACGCAGAGGAGAAGCAGATGACGGACCCCCTGGTGAAGATGTGGCTTGACGAGCTCGGAGACTTGGCTTATGATGTGGAGGACATCTTGGACGGCTTCGTCACTCAAGCTTTGCGACGCAATTTGATGGCCGAAACTCATCCTTCTGGCACTCAACCTAGCACAAGTAAGTTACGGAGCCTCATCCCTTCTTGTTGTACTAGTTTCACTCCAAATGCTATTAAGTTTAATGCGGAGATGTGGTCCAAAATCAAGAAGATCACCGCCAGGTTACAAGAAATTTCTGCACAAAAAAATGATCTCCATTTACGTGAGAACATTGCTGGGGAGAGTTCTACCAAAACAAGGGAAATACTACCCACTACTTCTTTAGTGGATGAGTCCCGTGTTTATGGTAGGGAAACAGATAAAGCAGCCATAGCCAACTTGTTACTCAGGGATGATCCATGTACTGATGAAGTCTGCGTGATTCCTGTTGTCGGTATGGCTGGTATTGGCAAAACTACTCTCGCCCAACTTGCATTCAACGATGATGAAATAAAAGCTCATTTTGATTTGAGAGTTTGGGTCTATGTTTCTGATGATTTTGATGTCTTGAAGATCACGAAAACAATTCTACAATCAGTTTCTCCGAATACTCAGGATGTTAATGATCTTAATTTGCTTCAGATGACATTAAGGGAGGGCCTTTCTGGGAAGAAATTTCTTCTTATCCTAGACGATGTATGGAATGAGAATTTTGATTCATGGGATTTTTTGTGCATGCCAATGAGATCAGGGGAACCGGGTAGTAAGCTTATTGTCACAACCCGTAATGAAGGTGTTGCATCAATCACTCGAACTTACCGAGCTTATCGTCTTCATGAGTTAGCATACAAAGATTGTTTATCTGTATTCACTCAACAAGCATTAGGGAAAAGTAATTTCGATGCTCATTCACACTTGAAAGAAGTTGGCGAGGAAATAGTGAGAAGGTGCAAGGGCTTGCCTTTGGCAGCAAAGGCCCTTGGTGGCATGTTGCGCAACCAAGTAAGTCATGATGCATGGGAAAATATTTTAACAAGTAAGATATGGGATCTACCTGAGGACAAAAGTCAAGTTCTTCCTGCACTCAAGTTGAGCTATCATCATCTCCCTTCTCATTTGAAGAAGTGTTTTGCCTATTGTTCGATATTTCCAAAAGGCTATGAATTCGACAAAGATGAATTAATCCAATTATGGATGGCTGAGGGTTTTTTTCAACAAACAAAGGAAAATACCCGACCAGAAGATTTGGGTTCTAAATACTTCTATGATTTATTGTCAAGAATAAGAGAATTGGAGAACTTGCAGGATCTTCGAGGAAAGCTTTCCATTTCAGGGTTGCATAATGTGGTGAATAGTCAAGATGCGATGCATGCTAAGTTAGAAGAAAAGCACAACATTGAAGAGTTGACGATGGAATGGGACAGCGATTATGATAAACCACGAAATGAAATGAATGAGATGAATGTTTTGGCAGGGCTACGACCACCCACAAACTTGAAAAAGCTCACAGTGGCATATTATGGTGGATCAACATTTTTAGGTTGGATAAGGGACCCCTCATTCCCATCAATGACACAATTAATTCTAAAGAATTGCCAAAGATGCACCTCATTACCATCTCTTGGCAAATTATCCTTCCTCAAGACCTTGCATATCAAGGGGATGAGTGAAATTAGAACCATAGATGTGGAGTTCTATGGAGGGGTTGTCCAGCCTTTTCCATCCCTGGAGTTTCTAAAGTTTGAGAATATGCCGAAATGGGAAGACTGGTTTTTTCCTGATGCGGTTGAAGGAGTAGAATTATTTCCACGCCTTAGAGAGCTTACCATAAGGAACTGCTCAAAGTTAGTTAAACAGTTGCCTGATTGCCTGCCATCCTTGGTGAAACTTGACATCTCTAAATGTCGAAATCTGGCAGTTCCATTCTCAAGATTTGCATCTCTGGGTGAACTAAATATAGAAGAATGCAAGGATATGGTGTTGAGAAGTGGGGTGGTTGCAGATAGTCGTGATCAGCTGACATCTAGGTGGGTTTGCAGTGGTCTTGAAAGCGCAGTGATTGGCCGCTGTGACTGGCTTGTATCATTGGATGACCAAAGACTGCCTAGCCATCTGAAAATGTTGAAGATAGCCGACTGCGTCAACCTGAAGAGCCTGCAAAATGGATTACAGAATCTCACTTGTCTTGAAGAGCTGGAAATGATGGGATGCCTAGCAGTGGAGTCATTCCCAGAGACGGGTTTGCCGCCCATGCTGAGACGTCTTGTGCTGCAGAAATGCAGGAGCCTGAGGTCGCTGCCCCATAACTACAGCTCATGTCCCCTTGAATCCTTGGAGATTAGGTGTTGTCCATCTCTCATCTGCTTTCCACATGGTGGGTTACCCTCCACCCTCAAGCAACTGATGGTTGCAGATTGTATACGGCTAAAGTATCTACCAGATGGAATGATGCACCGCAATTCCATACACAGCAACAACGATTGTTGTCTTCAAATACTGAGGATACATGATTGCAAGTCTCTCAAGTTCTTCCCAAGAGGGGAGTTACCCCCCACCCTTGAGCGGCTTGAGATTCGGCATTGCTCCAACTTGGAGCCAGTATCAGAGAAAATGTGGCCCAATAATACAGCTCTTGAGTATTTAGAGTTGAGGGGTTATCCCAATCTGAAAATCCTACCAGAATGCCTTCACAGCGTCAAGCAGCTCAAAATAGAAGACTGTGGAGGTCTGGAGGGGTTTCCAGAAAGAGGGTTTTCCGCCCCCAACCTCAGAGAGCTCCGTATTTGGAGATGTGAGAATCTCAAGTGCTTGCCCCATCAAATGAAAAACCTCACATCTCTTCGGGTTCTCAGCATGGAGGATTCTCCGGGACTGGAGTCCTTCCCAGAAGGGGGTTTGGCCCCCAATCTAAAATTTCTTTCAATTATAAATTGCAAGAATCTGAAGACTCCCAGTAAAGTATTCTACATGTGGTGGAAACAGAATGGAAACAGAAAGCCATTCAACGCTATCCTTTCATTGTTCAATCAGGGATCTGGCTTAATAAGGATATGGCAAGTAGTGCACAGGGTGAACAAGAAGAGAGAGAGAGAGATGAGACATGATCCATTCTCTTGA 3306 0.4341 MADFVGEAILSGFIQKLIDMVNPPELWNFASEGHVHSELNKWKKILMKIYAVLHDAEEKQMTDPLVKMWLDELGDLAYDVEDILDGFVTQALRRNLMAETHPSGTQPSTSKLRSLIPSCCTSFTPNAIKFNAEMWSKIKKITARLQEISAQKNDLHLRENIAGESSTKTREILPTTSLVDESRVYGRETDKAAIANLLLRDDPCTDEVCVIPVVGMAGIGKTTLAQLAFNDDEIKAHFDLRVWVYVSDDFDVLKITKTILQSVSPNTQDVNDLNLLQMTLREGLSGKKFLLILDDVWNENFDSWDFLCMPMRSGEPGSKLIVTTRNEGVASITRTYRAYRLHELAYKDCLSVFTQQALGKSNFDAHSHLKEVGEEIVRRCKGLPLAAKALGGMLRNQVSHDAWENILTSKIWDLPEDKSQVLPALKLSYHHLPSHLKKCFAYCSIFPKGYEFDKDELIQLWMAEGFFQQTKENTRPEDLGSKYFYDLLSRIRELENLQDLRGKLSISGLHNVVNSQDAMHAKLEEKHNIEELTMEWDSDYDKPRNEMNEMNVLAGLRPPTNLKKLTVAYYGGSTFLGWIRDPSFPSMTQLILKNCQRCTSLPSLGKLSFLKTLHIKGMSEIRTIDVEFYGGVVQPFPSLEFLKFENMPKWEDWFFPDAVEGVELFPRLRELTIRNCSKLVKQLPDCLPSLVKLDISKCRNLAVPFSRFASLGELNIEECKDMVLRSGVVADSRDQLTSRWVCSGLESAVIGRCDWLVSLDDQRLPSHLKMLKIADCVNLKSLQNGLQNLTCLEELEMMGCLAVESFPETGLPPMLRRLVLQKCRSLRSLPHNYSSCPLESLEIRCCPSLICFPHGGLPSTLKQLMVADCIRLKYLPDGMMHRNSIHSNNDCCLQILRIHDCKSLKFFPRGELPPTLERLEIRHCSNLEPVSEKMWPNNTALEYLELRGYPNLKILPECLHSVKQLKIEDCGGLEGFPERGFSAPNLRELRIWRCENLKCLPHQMKNLTSLRVLSMEDSPGLESFPEGGLAPNLKFLSIINCKNLKTPSKVFYMWWKQNGNRKPFNAILSLFNQGSGLIRIWQVVHRVNKKREREMRHDPFS* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1198 1101 Gene3D - 344 433 IPR042197 -
Vvi13g1198 1101 Pfam Rx N-terminal domain 10 101 IPR041118 -
Vvi13g1198 1101 PRINTS Disease resistance protein signature 210 225 - -
Vvi13g1198 1101 PRINTS Disease resistance protein signature 380 394 - -
Vvi13g1198 1101 PRINTS Disease resistance protein signature 283 297 - -
Vvi13g1198 1101 PRINTS Disease resistance protein signature 685 701 - -
Vvi13g1198 1101 FunFam Probable disease resistance protein At1g61300 166 336 - -
Vvi13g1198 1101 Gene3D - 10 129 - -
Vvi13g1198 1101 Pfam NB-ARC domain 188 429 IPR002182 GO:0043531
Vvi13g1198 1101 Gene3D Ribonuclease Inhibitor 477 729 IPR032675 -
Vvi13g1198 1101 SUPERFAMILY L domain-like 742 1055 - -
Vvi13g1198 1101 Gene3D - 165 337 IPR027417 -
Vvi13g1198 1101 SUPERFAMILY L domain-like 548 720 - -
Vvi13g1198 1101 Gene3D Ribonuclease Inhibitor 914 1051 IPR032675 -
Vvi13g1198 1101 Gene3D Ribonuclease Inhibitor 738 857 IPR032675 -
Vvi13g1198 1101 CDD RX-CC_like 6 149 IPR038005 -
Vvi13g1198 1101 Coils Coil 138 158 - -
Vvi13g1198 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 443 IPR027417 -
Vvi13g1198 1101 PANTHER DISEASE RESISTANCE PROTEIN RP 490 681 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1198 Vvi-Chr13 19944625 19949505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1198 211 467 WRKY Transcription Factor Family AT5G45050 27.239 1.06e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1198 - - vvi:100251485 1153.66