Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1191 ATGAAGATTCCCTGCTGTTTGGTGTGCCAGACTCGGTACAACGAGGAGGAGAGGGTTCCGTTGCTGCTTCAATGCGGTCATGGCTTCTGCAAGGAGTGTCTCTCTCGATTGTTCTCTGCATCTCCCGATACCAACCTCTCTTGCCCCCGCTGCCGCCACGTGTCGTCCGTGGGGAACTCCGTTCAGGCGCTGAGGAAGAACTACGGCGTCCTCGCGCTAATCCAGTCATCCTCCGCGCCGTCCTCGGCGTTCGACTGCGATTTTACAGATGAAGACGAGGATAACGAGGACGAGCTACTTAACGAAGAGGAGGAGGACGATGAGTCACACCGGCGCCGCCGATGCAGCCGCGGCTCGTACACGTCGAGCTCCAGCTGTGGACCGGTGATCGAGCTGGCGTCGCACCAGGACTTGAGGCTGGTGAAGCGGATTGGGGAAGGGAGGCGCGCCGGAGTGGAAATGTGGGCGGCTGTGCTCTCCGGCGGGTCAGGGCGGTGCCGCCACGGTGTGGCGGCTAAGAAGGTGGTGGTCGGGGAGGACACTGATTTGGGTTGGGTGCAGAACCGACTCGATAATTTGAGGCGTGCATCAATGTGGTGTAGAAATGTGTGCACTTTCCATGGAGCTACGAAAATGGAGGGTTCTCTTTGTCTGATAATGGATAGATGTAATGGTTCCGTTCAGTCCGAAATGCAGCGCAATGAAGGGCGGCTTACTTTGGAGCAAATCCTGAGGTACGGGGCAGACATTGCACGAGGGGTGGCTGAGCTTCATGCAGCAGGTGTTGTTTGTATGAATCTGAAACCATCCAATCTTCTTTTGGATGCCAATGGTCATGCAGTGGTTTCTGATTATGGACTTCCAGCAATTTTGAAGAAACCTGCCTGCAGGAAAGCTCAATCAGAGTGTGATTCCTCTGGAATCCATTCATGTATGGATTGTACAATGCTCAGTCCACACTACACAGCCCCAGAGGCATGGGAACCACCAGTAAAGAAGCCGTTAAATATATTCTGGGATGATGCAATTGGTATATCTCCTGAGTCTGATGCCTGGAGCTTTGGCTGTACATTGGTGGAAATGTGCACTGGTTCCATCCCGTGGGCTGGTTTAAGTGCAGAGGAAATCTATCGAGCTGTTGTCAAGTCTCGCAGACAACCTCCTCAATATGCAGGTGTAGTTGGTGTTGGAATACCTAGGGAATTGTGGAAGATGATTGGTGAATGTCTACAATTCAAGGCATCCAAAAGACCAACTTTTAATGCAATGTTAGCAACATTTCTCCGTCACTTGCAAGAGATACCTCGCAGCCCTCCTGCGAGCCCTGAGAATGAATTTCCCAGACCTCCTGGAACAAATGTGTCAGAACCAGCGCCTGCACCTTTGGAGGTTTTCCAGGATAATCCCAACCATCTACATCAACTTGTATCTGAAGGGGATTTGAATGGTGTAAGAGATTTGCTTGCAAAGGCTGCATCAGGAGGCAGTAGCATTTCAATTTATTCTCTATTTGAAGCACAAAATTCTGATGGCCAAACTGCTCTCCACTTGGCTTGTAGACGTGGAAGTGCAGAACTTGTTGAGGCAATTTTGGAGTACAGAGAGGCAAATGTGGATGTCCTGGACAGAGATGGGGATCCTCCCCTAGTTTTTGCTTTAGCAGCTGGATCGCCAGAATGCGTTCAGGCTCTCATCAGAAGAGGTGCAAATGTCAGATCTAGGTTGAGGGAAGGCTTTGGTCCATCAGTTGCTCATGTCTGTGCCTTCCATGGCCAACCTGATTGCATGCGTGAGCTACTGTTGGCTGGAGCTGATCCAAATGCAGTGGATGATGAAGGTGAATCTGTGCTGCACAGGGCAATCGCCAAGAAATATACAGATTGTGCCCTTGTCCTTTTGGAAAATGGGGGCTGTGAGTCTATGGCTGTTCTGAATTCCAAAACTCTGACACCTTTGCACTTGTGCGTAGCAACATGGAATGTGGCTGTTGTCAGAAGGTGGGTAGAGGTGGCATCTCCTGAAGAGATCGCTGAGGCAATTGATATACCAAGTGCAGTTGGCACTGCACTGTGTATGGCAGCTGCTTTAAAGAAGGATCATGAAATTGAGGGGAGAGAACTAGTACGGATATTGCTTACTGCTGGGGCAGATCCAACTGCTCAAGATGTGCAGCATAGGCGAACAGCTTTGCACACTGCTGCTATGGCTAATGATGTTGAATTGGTCAAGATTATTCTTGATGCTGGGGTCGACGTGAACATCCGGAATGTGCATAACACAATTCCCCTTCATGTCGCATTGGCCAGGGGTGCAAAATCATGCGTTGGATTGCTTTTATCTGCTGGGGCAAATTGTAACTTGCAGCAGGATGATGAAGGTGACAACGCGTTCCATATAGCAGCTGATGCAGCAAAAATGATACGTGAAAATCTTGAATGGCTCATTATCATGCTGAGGAATCCAGATGCTGCTGTTGAAGTTAGAAATCACAATGGGAAGACATTAAGGGACTTTCTGGAGGCCCTTCCCCGGGAATGGATTTCTGAAGATCTAATGGAGGCACTCATGAATAGAGGGATTCATCTTTCTACTACAGTATTTGAAATTGGAGACTGGGTGAAATTTAAAAGAAGTATATCTACTCCTTCATATGGGTGGCAAGGTGCGAAACATAAGAGTGTTGGCTTTGTGCAGAGTGTTCCAGACAGGGACAATCTAATTGTGGCATTTTGTTCTGGAGAGGCTCGTGTATTGGCAAATGAAGTTATAAAAGTGATTCCATTAGACAGGGGACAGCATGTGAAACTTAAACCAGATATCAAAGAGCCAAGGTTTGGCTGGCGAGGCCAATCACGTGACAGCATTGGAACTGTTCTCTGTGTTGATGATGATGGGATTTTGCGTGTTGGGTTCCCCGGAGCATCCAGAGGATGGAAAGCTGATCCAGCTGAAATGGAAAGGGTAGAAGAATTTAAGGTTGGGGACTGGGTCCGTATTCGTCCCACTCTTACAACAGCAAAGCATGGACTTGGATCTGTAACCCCAGGGAGCATTGGTATAGTGTATTGTGTTAGACCAGATAGTAGCCTGTTGTTGGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCCTGTTGTCCCTTTCAGGATTGGTGACCGGGTATGTGTGAAGAGGTCTGTTGCAGAGCCTAGATACGCTTGGGGTGGTGAGACCCATCATAGTGTAGGAAGGATAAGTGGGATAGAGAATGACGGTCTCCTGATAATTGAAATACCAAAACGACCAATACCATGGCAGGCTGATCCTTCTGACATGGAAAAGGTTGAGGATTTCAAGGTTAGGGATTGGGTTAGAGTGAAAGCTTCAGTATCCTCCCCAAAATATGGGTGGGAGGACGTAACACGGAATAGCATTGGGCTAATCCATAGCTTGGAGGAGGATGGTGATGTGGGTATTGCTTTCTGCTTCAGGAGCAAGCCTTTCCGTTGTTCAGTGACAGATGTAGAGAAGGTGCCTCCCTTTGAAGTGGGACAAGAGATTCATGTGATGCCATCCATTTCTCAGCCACGGCTTGGATGGTCAAATGAAACTGCTGCTACTGTTGGAAAGATAGTAAGAATTGACATGGATGGGGCTTTAAATGTGAAAGTACCTGGCAGACTTAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAGAAGCTTTCAGGATTTGCAGTTGGTGATTGGGTACGTTCAAAACCCAGCCTGGGAACTAGACCAAGTTATGACTGGAACACTTTTGGGAAAGAAAGTTTAGCAGTTGTGCATAGCATACAGGATACTGGTTATCTGGAGTTGGCTTGCTGTTTCCGTAAAGGGCGATGGATTACACATTATACAGATGTTGAAAAGGTTCCTTGCTTCAAAGTTGGGCAGCATGTTCAGTTCCGGAGTGGATTGCATGAGCCAAGGTGGGGCTGGAGAGGGACGCGATCTGATTCACGTGGTGTTATAACTAGTGTGCATGCTGATGGAGAAATGAGGGTGGCGTTTTTTGGTCTTCCAGGATTGTGGAGAGGTGATCCTGCAGATTTTGAGATAATGCAGATGTTTGAAGTGGGAGAGTGGGTGAGAATAAGAGATGATGCTGGTAGCTGGAAAACCATAGGGGCAGGTAGCATTGGCATTGTACAAGGTATAGGCTATGAAGGAGATGAATGGGATGGAACCATTTCTGTTGGGTTTTGTGGGGAGCAAGAAAGATGGGTGGGGCCTACTTCCCATCTTGAAAGTGTGGATAGGCTCATGGTTGGGCAGAAGGTTAGAGTTAAACTCTCTGTGAAACAACCAAGGTTTGGGTGGTCAGGCCATAGTCATGGAAGCATTGGGACCATATCAGCCATCGATGCTGATGGAAAGCTGAGAATATATACTCCAGCAGGCTCAAAAGCATGGATGCTGGATGCAGCAGAAGTGGAGCTGGTGGAGGAAGAGGAACTTGGAATTGGAGACTGGGTTAGGGTTAGGGCATCAGTCTCGACCCCTACTCACCATTGGGGAGAAGTCAGTCATGCAAGCATTGGGGTGGTCCATCGGATGGAAAATGATGAGCTATGGGTGGCATTCTGCTTCATGGAGAGATTATGGCTTTGCAAGGCTTGGGAGATGGAAAAAGTTCGGCCTTTCAAAGTAGGGGATAGAGTGAGGATCAGAGAAGGGCTGGTGACCCCGCGGTGGGGCTGGGGAATGGAGACACATGCAAGCAAAGGGCAGGTGGTGGGAGTAGATGCCAATGGGAAATTGAGGATTAAGTTCCAGTGGAGAGAAGGGAGGACTTGGCTAGGAGATCCAGCAGATATTGTTCTTGATGAGACCATACCTGGCACAACTGGCACTTTATGA 4899 0.4852 MKIPCCLVCQTRYNEEERVPLLLQCGHGFCKECLSRLFSASPDTNLSCPRCRHVSSVGNSVQALRKNYGVLALIQSSSAPSSAFDCDFTDEDEDNEDELLNEEEEDDESHRRRRCSRGSYTSSSSCGPVIELASHQDLRLVKRIGEGRRAGVEMWAAVLSGGSGRCRHGVAAKKVVVGEDTDLGWVQNRLDNLRRASMWCRNVCTFHGATKMEGSLCLIMDRCNGSVQSEMQRNEGRLTLEQILRYGADIARGVAELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLPAILKKPACRKAQSECDSSGIHSCMDCTMLSPHYTAPEAWEPPVKKPLNIFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKSRRQPPQYAGVVGVGIPRELWKMIGECLQFKASKRPTFNAMLATFLRHLQEIPRSPPASPENEFPRPPGTNVSEPAPAPLEVFQDNPNHLHQLVSEGDLNGVRDLLAKAASGGSSISIYSLFEAQNSDGQTALHLACRRGSAELVEAILEYREANVDVLDRDGDPPLVFALAAGSPECVQALIRRGANVRSRLREGFGPSVAHVCAFHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKYTDCALVLLENGGCESMAVLNSKTLTPLHLCVATWNVAVVRRWVEVASPEEIAEAIDIPSAVGTALCMAAALKKDHEIEGRELVRILLTAGADPTAQDVQHRRTALHTAAMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGANCNLQQDDEGDNAFHIAADAAKMIRENLEWLIIMLRNPDAAVEVRNHNGKTLRDFLEALPREWISEDLMEALMNRGIHLSTTVFEIGDWVKFKRSISTPSYGWQGAKHKSVGFVQSVPDRDNLIVAFCSGEARVLANEVIKVIPLDRGQHVKLKPDIKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTTAKHGLGSVTPGSIGIVYCVRPDSSLLLELSYLPNPWHCEPEEVEPVVPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISGIENDGLLIIEIPKRPIPWQADPSDMEKVEDFKVRDWVRVKASVSSPKYGWEDVTRNSIGLIHSLEEDGDVGIAFCFRSKPFRCSVTDVEKVPPFEVGQEIHVMPSISQPRLGWSNETAATVGKIVRIDMDGALNVKVPGRLSLWKVSPGDAEKLSGFAVGDWVRSKPSLGTRPSYDWNTFGKESLAVVHSIQDTGYLELACCFRKGRWITHYTDVEKVPCFKVGQHVQFRSGLHEPRWGWRGTRSDSRGVITSVHADGEMRVAFFGLPGLWRGDPADFEIMQMFEVGEWVRIRDDAGSWKTIGAGSIGIVQGIGYEGDEWDGTISVGFCGEQERWVGPTSHLESVDRLMVGQKVRVKLSVKQPRFGWSGHSHGSIGTISAIDADGKLRIYTPAGSKAWMLDAAEVELVEEEELGIGDWVRVRASVSTPTHHWGEVSHASIGVVHRMENDELWVAFCFMERLWLCKAWEMEKVRPFKVGDRVRIREGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFQWREGRTWLGDPADIVLDETIPGTTGTL* 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1191 1632 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1623 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat profile. 544 576 IPR002110 GO:0005515
Vvi13g1191 1632 Gene3D - 578 725 IPR036770 -
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat profile. 725 757 IPR002110 GO:0005515
Vvi13g1191 1632 FunFam E3 ubiquitin-protein ligase KEG 724 858 - -
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat region circular profile. 544 571 - -
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat region circular profile. 758 786 - -
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat profile. 579 611 IPR002110 GO:0005515
Vvi13g1191 1632 SUPERFAMILY RING/U-box 5 60 - -
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat profile. 510 543 IPR002110 GO:0005515
Vvi13g1191 1632 MobiDBLite consensus disorder prediction 435 455 - -
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat region circular profile. 725 756 - -
Vvi13g1191 1632 Pfam Mind bomb SH3 repeat domain 1117 1235 IPR040847 -
Vvi13g1191 1632 Pfam Mind bomb SH3 repeat domain 991 1111 IPR040847 -
Vvi13g1191 1632 Pfam Mind bomb SH3 repeat domain 1243 1363 IPR040847 -
Vvi13g1191 1632 Pfam Mind bomb SH3 repeat domain 867 911 IPR040847 -
Vvi13g1191 1632 Pfam Mind bomb SH3 repeat domain 1501 1618 IPR040847 -
Vvi13g1191 1632 Pfam Mind bomb SH3 repeat domain 1370 1491 IPR040847 -
Vvi13g1191 1632 Pfam Mind bomb SH3 repeat domain 919 985 IPR040847 -
Vvi13g1191 1632 Pfam Protein kinase domain 159 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1191 1632 MobiDBLite consensus disorder prediction 440 455 - -
Vvi13g1191 1632 FunFam E3 ubiquitin-protein ligase KEG 451 680 - -
Vvi13g1191 1632 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Vvi13g1191 1632 MobiDBLite consensus disorder prediction 90 125 - -
Vvi13g1191 1632 Gene3D - 464 577 IPR036770 -
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat profile. 758 790 IPR002110 GO:0005515
Vvi13g1191 1632 CDD RING-HC_KEG-like 3 59 - -
Vvi13g1191 1632 Gene3D Transferase(Phosphotransferase) domain 1 130 437 - -
Vvi13g1191 1632 PRINTS Ankyrin repeat signature 511 526 IPR002110 GO:0005515
Vvi13g1191 1632 PRINTS Ankyrin repeat signature 741 755 IPR002110 GO:0005515
Vvi13g1191 1632 ProSiteProfiles Ankyrin repeat region circular profile. 510 532 - -
Vvi13g1191 1632 SMART ring_2 6 51 IPR001841 -
Vvi13g1191 1632 Pfam zinc-RING finger domain 6 53 IPR001841 -
Vvi13g1191 1632 ProSiteProfiles Protein kinase domain profile. 138 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1191 1632 MobiDBLite consensus disorder prediction 90 104 - -
Vvi13g1191 1632 Gene3D - 726 859 IPR036770 -
Vvi13g1191 1632 SUPERFAMILY Protein kinase-like (PK-like) 135 446 IPR011009 -
Vvi13g1191 1632 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Vvi13g1191 1632 SMART ANK_2a 467 500 IPR002110 GO:0005515
Vvi13g1191 1632 SMART ANK_2a 758 787 IPR002110 GO:0005515
Vvi13g1191 1632 SMART ANK_2a 612 643 IPR002110 GO:0005515
Vvi13g1191 1632 SMART ANK_2a 725 754 IPR002110 GO:0005515
Vvi13g1191 1632 SMART ANK_2a 579 608 IPR002110 GO:0005515
Vvi13g1191 1632 SMART ANK_2a 510 540 IPR002110 GO:0005515
Vvi13g1191 1632 SMART ANK_2a 685 720 IPR002110 GO:0005515
Vvi13g1191 1632 SMART ANK_2a 544 573 IPR002110 GO:0005515
Vvi13g1191 1632 SMART ANK_2a 792 827 IPR002110 GO:0005515
Vvi13g1191 1632 Pfam Ankyrin repeats (3 copies) 704 788 IPR002110 GO:0005515
Vvi13g1191 1632 Pfam Ankyrin repeats (3 copies) 585 657 IPR002110 GO:0005515
Vvi13g1191 1632 Pfam Ankyrin repeats (3 copies) 472 572 IPR002110 GO:0005515
Vvi13g1191 1632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Vvi13g1191 1632 FunFam Uncharacterized protein 130 441 - -
Vvi13g1191 1632 SUPERFAMILY Ankyrin repeat 504 804 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1191 Vvi-Chr13 19849003 19867655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1191 161 420 MAP Kinase Kinase Kinase AT5G58950 26.812 2.08e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vvi13g1191 Pkinase 2.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1191 K16279 - vvi:100265166 3231.43