Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1189 ATGGGGAGTATAGCAGTGAGGGCTGGTGCAGACGATGAAAAGGAAGCAGCCAGCGGGATGCCGAGCTTCGATCCTCAATTACCTGTTTCGAATGCACTTTGTACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGACACTTGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAAGCACTGCATTCAATTCGACAAAACCAAGTGGTCGAGCAGTTACTTCTGATCCCCTCCATAGTGTCACTTTTGATAAGTCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAGAGGTTGCCATTGCAAAAGGGTCAACAATCAAACCTGGTTTCTATATCTAGTGGTAGTGTAGAGAACTGGGGAGAGTCTGCAATGGCAGATGCCAGTCCTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGTTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGATCAAAGGATAAAAATGATCAGAAGACTCTTCGTAGGCTTGCTCAAAATCGTGAAGCTGCACGAAAAAGCCGATTGAGAAAGAAAGCATATGTCCAACAGCTAGAAAGTAGCCGGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAGGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCGACAAATCAACGAACTGAGATCAGCGGTCAATTCTCATGCAAGCGATGCTGAACTTCGTGTTATTGTTGATAATATCATGGCACACTATGATGACATATTCAGGCTGAAGGGCGTTGCAGCCAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCGGAAACTTGCAACAGTCCTCCCAACAGGCAGAGGATGCATTATCACAAGGAATGGAAGCATTGCAGCAGTCCCTGGCTGAGACTCTGTCCAGTGGTTCTCTTGGCTCTTCTGGTTCATCTGGAAATGTGGCAAACTATATGGGTCAAATGGCCATGGCCATGGGAAAGCTGGGGACTCTTGAGGGGTTTATTCGTCAGGCTGACAATCTACGACAACAAACGCTACAACAGATGCACCGCATACTGACAACCCGCCAGTCAGCTCGTGCGCTCCTTGCTATACATGACTACTTCTCCCGACTCCGTGCTCTGAGTTCTCTCTGGCTGGCACGTCCAAGAGAGTGA 1410 0.4759 MGSIAVRAGADDEKEAASGMPSFDPQLPVSNALCTEGNSIHSYRVSDFGTLEQSIGFHLEDAVDLSGSTAFNSTKPSGRAVTSDPLHSVTFDKSQNSFDINPSAARVESQRLPLQKGQQSNLVSISSGSVENWGESAMADASPRTDISTDVDTDDKVQRFERGQPASNMASDSSDRSKDKNDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHASDAELRVIVDNIMAHYDDIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1189 469 Gene3D - 183 234 - -
Vvi13g1189 469 Pfam Basic region leucine zipper 181 226 IPR004827 GO:0003700|GO:0006355
Vvi13g1189 469 CDD bZIP_HBP1b-like 184 236 - -
Vvi13g1189 469 ProSiteProfiles DOG1 domain profile. 249 466 IPR025422 GO:0006351|GO:0043565
Vvi13g1189 469 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 226 IPR004827 GO:0003700|GO:0006355
Vvi13g1189 469 SUPERFAMILY Leucine zipper domain 184 227 IPR046347 GO:0003700|GO:0006355
Vvi13g1189 469 Pfam Seed dormancy control 266 341 IPR025422 GO:0006351|GO:0043565
Vvi13g1189 469 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700|GO:0006355
Vvi13g1189 469 Coils Coil 260 280 - -
Vvi13g1189 469 SMART brlzneu 180 243 IPR004827 GO:0003700|GO:0006355
Vvi13g1189 469 Coils Coil 203 230 - -
Vvi13g1189 469 MobiDBLite consensus disorder prediction 134 186 - -
Vvi13g1189 469 FunFam BZIP family transcription factor 183 232 - -
Vvi13g1189 469 PANTHER TRANSCRIPTION FACTOR TGA9 117 469 - -
Vvi13g1189 469 MobiDBLite consensus disorder prediction 147 161 - -
Vvi13g1189 469 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1189 Vvi-Chr13 19780955 19804690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1189 138 469 bZIP Transcription Factor Family AT3G12250 79.518 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi13g1189 DOG1 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1189 K14431 - vvi:100242879 875.544