Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1188 ATGGAGGACCCAGAAACAGTAGACCGTGAATTTAACGATGAAGAAGAAGATCAGGATGAAGATTGGGGGGACTGGGGAGCAGACGACAATGAAGAAGAGGAGTCGGACCCAGATTTCCTGTGTTTGTTCTGCGATTCTAAGTACAGTTCTTGCGATGCTCTCTTCGAACACTGCTCTTCCATTCACCACTTCGATTTTCTCAGTATTAGGGAAACCCTAAGTTTGGATTTCTATGGGTCATTCAAACTCATCAACTTCGTCAGGTCTCGGGTGGCAGAAAATAGGTGTTGGAGTTGCGGGCTTGTCTGTCAGTCCAACCAAGATCTTCAAACTCATTTACATGAAACAGCCAATTTTGAAGAGATTAAACTGCATTTGGATGATGATAAATATCTAAACCCTTTCATGCAAGAGGATCCCCTTTTGTACAGTTTTAGTCAAGATGAAGAAGGTGAAGATGACGATGCTACTGCACTTGAAAAAGAGGAAATAATGAGGGATCTAAGGGAATTTGGAGAGATTTGCATTGATGATGGGGACATCATAGATGCCCTTGCATCTGATTTTGACACCTTGAATGAAGATAGAAGGGAGGGTGCATCTGCTTCCAATGGCTATTATGGCATGGAAAATATCTCAGAGAAGGAGATAGGCTCTTGTATTGGTGCAAAAGAACATGTTGGTTCATTTAAAAGAAAGCCAAAAGATAAGCATTTGAGAGTTTCTTTTGCAAATGTTGTTTCAAAGGAAATCAAGAATGTGAATGAGAATTATTTTGGGGCATATAGTTCATTTGGCATCCACAGAGAGATGATAAGTGATAAGGTAAGAATGGATGCTTATAGGCAAGCTATCTTGAATAATCCTTCTCTCATGAAAGGTGCAACTGTGTTGGATGTAGGTTGTGGGACTGGCATACTGAGTCTCTTTGCAGCCCAAGCTGGGGCTTCAAGGGTAATCGCAGTAGAAGCCAGTGAAAAGATGGCTTCAGTGGCAACTCAGGTTGCAAAAGACAATGGCCTTTTGTGTAGTGCAAGCCCAAATGCAGGCAATAATCATTATACCGGGGTGATAAAAGTGGTTCAAGGTATGGTTGAAGAGCTTGATAAATCCATTGAATCCCACAGTATTGATGTGTTATTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCGATGCTTAGCTCAGTGCTCTTTGCAAGAGATCACTGGCTGAAGCCTGGAGGTGCCATTCTCCCTGACACAGCAACTATTTTTGTTGCAGGCTTTGGAAGAGGTGGTACCAGTATTCCATTTTGGGAAAACGTTTATGGGTTCAATATGTCTTGTGTTGGCAAGGAACTTGTTGAAGATGCTGCTCAAACTCCTATTGTTGATATAGTGGACAGTCATGATATAGTTACAGATGCTGCTGTTCTCCAGACCTTTGATCTGGTGACCATGAAGCCTGAAGAAATGGATTTCACAGCAAGCATCAGATTGCAACCGAAGTTGGATCATCCAGCTGACACCAACGCCTCCATGGATTTGGAACAGAAACCAACTTGGTGTCATGGAGTTGTCTTATGGTTTGAGACTGGTTTTACCAGTCGGTTCTGCAGAGAAACATCAACCATCCTCTCCACTTCACCATTCACTCCCAAAACACACTGGTCACAAACAATCCTCACCTTCAGAGAACCAATTGCAATGGCAGCTGGAAAACCCAATGCCAAGAAATCAGGGGGAGTTGGCAGTGATGCCTGCCCTGCCTCCAGCGTCCATTTGCGAATCAGCATTATCCGTGCTGCCCAGCATCGCAGTATCGATATCTCCTTGGAGACGACAGGGATTGCCTGTGATGGTCGGAAGCACAGTTGGCCTGTCCAGATCTTTAATCTGAGCTAG 1890 0.437 MEDPETVDREFNDEEEDQDEDWGDWGADDNEEEESDPDFLCLFCDSKYSSCDALFEHCSSIHHFDFLSIRETLSLDFYGSFKLINFVRSRVAENRCWSCGLVCQSNQDLQTHLHETANFEEIKLHLDDDKYLNPFMQEDPLLYSFSQDEEGEDDDATALEKEEIMRDLREFGEICIDDGDIIDALASDFDTLNEDRREGASASNGYYGMENISEKEIGSCIGAKEHVGSFKRKPKDKHLRVSFANVVSKEIKNVNENYFGAYSSFGIHREMISDKVRMDAYRQAILNNPSLMKGATVLDVGCGTGILSLFAAQAGASRVIAVEASEKMASVATQVAKDNGLLCSASPNAGNNHYTGVIKVVQGMVEELDKSIESHSIDVLLSEWMGYCLLYESMLSSVLFARDHWLKPGGAILPDTATIFVAGFGRGGTSIPFWENVYGFNMSCVGKELVEDAAQTPIVDIVDSHDIVTDAAVLQTFDLVTMKPEEMDFTASIRLQPKLDHPADTNASMDLEQKPTWCHGVVLWFETGFTSRFCRETSTILSTSPFTPKTHWSQTILTFREPIAMAAGKPNAKKSGGVGSDACPASSVHLRISIIRAAQHRSIDISLETTGIACDGRKHSWPVQIFNLS* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1188 629 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 255 608 IPR025799 GO:0016274|GO:0018216
Vvi13g1188 629 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 42 626 IPR025799 GO:0016274|GO:0018216
Vvi13g1188 629 SUPERFAMILY beta-beta-alpha zinc fingers 17 154 IPR036236 -
Vvi13g1188 629 Gene3D Vaccinia Virus protein VP39 246 414 IPR029063 -
Vvi13g1188 629 Pfam C2H2 type zinc-finger (2 copies) 41 116 IPR041661 -
Vvi13g1188 629 FunFam Probable protein arginine N-methyltransferase 3 417 623 - -
Vvi13g1188 629 Pfam Methyltransferase domain 297 410 IPR041698 -
Vvi13g1188 629 Gene3D - 417 619 - -
Vvi13g1188 629 MobiDBLite consensus disorder prediction 1 33 - -
Vvi13g1188 629 CDD AdoMet_MTases 296 413 - -
Vvi13g1188 629 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 262 569 IPR029063 -
Vvi13g1188 629 FunFam Protein arginine N-methyltransferase 6 251 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1188 Vvi-Chr13 19770175 19777155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1188 13 628 C2H2 Transcription Factor Family AT3G12270 53.375 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1188 K11436 - vvi:100253139 1241.48