Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1185 ATGGCGTCGGGAGCAGGCAATGCCGGGGTGGAGTGGCACCAGAGGCCTCCAAACCCCAAAAACCCCATCGTCTTCTTCGACATCACCATCGGCACCATCCCCGCCGGTCGCATCAAGATGGAGCTCTTCTCCGACATCGCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGGCAAATAGTGGGCCAGGTACCAATGGTTGTCAGTTCTTTATCACATGCTCGAAATGTGACTGGCTTGACAACAAGCATGTGGTATTCGGGAGAGTTCTTGGAGAAGGCCTTTTGGTTGTGAGAAAGATCGAGAACGTAGCCACTGGACCAAACAACCGGCCTAAACTGGCATGTGTGATTGCTGAATGTGGAGAAATGTAG 570 0.4965 MASGAGNAGVEWHQRPPNPKNPIVFFDITIGTIPAGRIKMELFSDIAPKTAENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPGTNGCQFFITCSKCDWLDNKHVVFGRVLGEGLLVVRKIENVATGPNNRPKLACVIAECGEM* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1185 189 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 187 IPR002130 GO:0000413|GO:0003755
Vvi13g1185 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 88 IPR002130 GO:0000413|GO:0003755
Vvi13g1185 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Vvi13g1185 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Vvi13g1185 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 162 IPR002130 GO:0000413|GO:0003755
Vvi13g1185 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 IPR002130 GO:0000413|GO:0003755
Vvi13g1185 189 FunFam Peptidyl-prolyl cis-trans isomerase 11 189 - -
Vvi13g1185 189 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 189 - -
Vvi13g1185 189 CDD cyclophilin_ABH_like 22 187 - -
Vvi13g1185 189 PIRSF Peptidylpro_ismrse 11 189 IPR024936 GO:0003755
Vvi13g1185 189 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 25 188 IPR002130 GO:0000413|GO:0003755
Vvi13g1185 189 Gene3D - 10 189 IPR029000 -
Vvi13g1185 189 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 71 88 IPR020892 GO:0003755|GO:0006457
Vvi13g1185 189 SUPERFAMILY Cyclophilin-like 13 189 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1185 Vvi-Chr13 19663726 19668722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1185 36 187 U-box Gene Family AT5G67530 43.791 4.74e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1185 K09567 - vvi:100253143 400.979