Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1180 ATGGCCCTTCAATATCTTTCATCCTATTCCTCACTCTCCCAACTCATCACCATTCTTTGCTTCTATATCATTCTTCATTTCCCCTTTTATTCATCGTCGTCATCATTTCATGTCTCTTCTACATCTACTTTTACTCCTATCACTTCTCCTTTGATTATTAAGCAAGGAAAAGAAGCACTCACTCTCATAACATGGAAATCTAGCCTTCATACTCAATCACAAACTTTCCTTTCTTCTTGGTCTGGAGTTTCCCCATGCAATCATTGGTTTGGAGTTACTTGCCACAAGTCAGGAAGTGTCTCCAGTTTAAACCTTGAGAATTGTGGTCTAAGAGGTACGCTCCACAATCTTGATTTCTTTTCACTCCCTAATCTCCTCACTCTTAATCTTTCTAACAACTCCTTCTATGGAACCATTCCTATCCATATTGGTAATCTTTCCAAATTGATCACCATCCTTGATTTGGGTTTCAATAATTTCAATGGCATCATACCTCACCAAGTTGGATTGCTAACATCTCTTAGTTTTCTTGTTTTGGCTTCCAACTATTTAAGAGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGCACCTTTATGAGAATGAGCTTTCTGGTTCTATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTGAGTTGTCAACTAACAATCTCAGTGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTTATACGAATGAACTTTCTGGTTCGATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTGAGTTGTCAACTAACAATCTCAGTGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTTATCAGAATGAGCTTTCTGGTTTGATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTGAGTTGTCAACTAACAATCTCAGTGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTTATCAGAATGAGCTTTCTGGTTTGATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTAAGTTGTCAACTAACAATCTTAGTGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTCATAGGAATGAGCTTTCTGGTTCTATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATAATCTTGCCTTGTCAACTAACAATCTCAATGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAATCAATTTGTACCTTTATAATAATGAACTTTCTGGTCCCATCCCTCAAGAAATTGGATTGTTGAGATCTCTTATTGAACTTGACTTGTCTGATAACAATTTGACGGGTTCGATCCCTACTTCCATAGGAAACTTGGTCAATTTAATGTATTTGTATCTTTCTCATAATAAACTGTTTGGTTCCATTCCACAAGAGATTGAATTGTTGAGCACTCTTAATAATCTTGAGTTGTCAAATCACATTTTGAGTGGTCCGATCCCTCATTCGATTGGAAACCTGAGCAACTTAATCAGTTTGTTCCTTCAGGGTAATAAACTTTCTGGTTTCATTCCATCAGAGATTGGATTGTTGAGATCCCTTAAAGATCTTGATTTATCAAATAACAATCTCATTGGTTCGATTCCGACTTCCATTGGAAACTTGAGCAACTTAGTCACTTTGTTTGTTCATTCCAATAAGCTTAATGGTTCCATCCCACAAGATATTCATTTGCTAAGTTCCCTCAGTGTTCTAGCCTTGTCAAATAACAATCTCTCTGGCATCATTCCTCATTCTTTAGGAAAATTAGGCAGCTTAACTGCCTTATACCTCCGAAATAACAGTCTTTCAGGTTCAATTCCTTACTCAATAGGAAACTTGTCCAAGTTAAATACTTTAGATCTTCATTCTAATCAACTTTTTGGTTCCATTCCTCGAGAAGTTGGATTTTTGAGGTCTCTTTTTGCTCTTGATTTGTCAAATAACAAACTCACTGGTTCAATCCCTACTTCCATAGGAAACTTGGTCAACTTAACTACTTTGCACATTTCCAAAAATCAGCTTTTTGGCAACATTCCTTTGGAATTAGGAAATTTGTCCGATCTCGTACATCTTAACTTGGCATCAAACCATTTAAGTGGCCCAATTCCCCAACAAGTTCGATACTTTCGGAAATTGTTGTCCTTGAATTTGAGCAATAATAAGTTTGGGGAAAGCATTCCCGCTGAGATTGGGAATGTGATCACCCTTGAGAGTCTTGACCTTTGCCAAAATATGTTGACAGGAGAGATACCACAACAACTTGGAGAATTACAAAGCTTGGAAACATTGAATCTCTCCCATAACAACCTCTCAGGTACCATCCCACCCACTTTTGATGATTTGCGAGGCCTGACATCCATAAATATATCCTACAATCAGTTGGAAGGTCCGCTACCCAACCTCAAAGCTTTTCGAGATGCCCCATTTGAGGCATTAAGAAATAACAAAGGTTTGTGTGGTAACATCACTGGTCTCGAGGCATGCAACACTGGCAAAAAGAAGGGGAACAGATTTTTTCTTTTGATTATACTCCTTATTTTGAGCATTCCATTGCTTTCATTTATTTCTTATGGAATTTATTTTCTTCGTCGAATGGTAAGGAGTAGAAAAATCAATTCTAGAGAAGTAGCAACTCATCAAGATCTATTCGCAATATGGGGCCATGATGGGGAAATGTTATATGAACACATCATTGAGGGGACTGAAGATTTTAACTCAAAAAATTGTATTGGCACCGGAGGATATGGAACTGTTTACAAGGCCGAGTTGCCTACAGGTCGAGTTGTTGCTGTGAAAAAACTTCACTCAACACAAGATGGAGAGATGGCTGATCTGAAAGCTTTCAAAAGTGAGATTCATGCTTTAGCAGAGATACGACATCGCAACATTGTCAAGCTTTATGGCTTTTGTTCATGTTCAGAAAACTCATTTTTGGTTTATGAGTTCATGGAAAAGGGAAGTTTGAGAAACATTCTAAGCAACAAGGAAGAAGCAATGGAGTTTGATTGGGTTTTGAGGCTAAATGTTGTCAAAGGCATGGCTGAAGCTTTATCTTATATGCACCATGATTGCTCCCCTCCTTTAATTCACCGAGACATATCGAGCAACAATGTTCTGTTAGATTCAGAATATGTAGCTCATGTATCCGACTTCGGCACAGCTCGACTTCTGAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATATTGCTCCAGAACTTGCTTATGGCTCAAAGGTGGACAATAAAACAGATGTTTATAGCTTTGGAGTGGTAACATTGGAAGCAATTTTTGGAAAGCATCCTGGGGAACTCATCTCATCGCTCTTTTCATCAGCGTCCTCGTCATCCTCATCACCATCAACTGTCTATCATTTACTGTTGAATGAAGAGATAGACCAACGTCTCTCACCTCCTATGAATCAAGTGGCTGAGGAAGTAGTGGTTGCAGTGAAGTTAGCACTTGCATGCTAA 3600 0.3881 MALQYLSSYSSLSQLITILCFYIILHFPFYSSSSSFHVSSTSTFTPITSPLIIKQGKEALTLITWKSSLHTQSQTFLSSWSGVSPCNHWFGVTCHKSGSVSSLNLENCGLRGTLHNLDFFSLPNLLTLNLSNNSFYGTIPIHIGNLSKLITILDLGFNNFNGIIPHQVGLLTSLSFLVLASNYLRGPIPPSIGNLRNLTTLHLYENELSGSIPQEIGLLRSLNDLELSTNNLSGPIPPSIGNLRNLTTLYLYTNELSGSIPQEIGLLRSLNDLELSTNNLSGPIPPSIGNLRNLTTLYLYQNELSGLIPQEIGLLRSLNDLELSTNNLSGPIPPSIGNLRNLTTLYLYQNELSGLIPQEIGLLRSLNDLKLSTNNLSGPIPPSIGNLRNLTTLYLHRNELSGSIPQEIGLLRSLNNLALSTNNLNGPIPPSIGNLRNLINLYLYNNELSGPIPQEIGLLRSLIELDLSDNNLTGSIPTSIGNLVNLMYLYLSHNKLFGSIPQEIELLSTLNNLELSNHILSGPIPHSIGNLSNLISLFLQGNKLSGFIPSEIGLLRSLKDLDLSNNNLIGSIPTSIGNLSNLVTLFVHSNKLNGSIPQDIHLLSSLSVLALSNNNLSGIIPHSLGKLGSLTALYLRNNSLSGSIPYSIGNLSKLNTLDLHSNQLFGSIPREVGFLRSLFALDLSNNKLTGSIPTSIGNLVNLTTLHISKNQLFGNIPLELGNLSDLVHLNLASNHLSGPIPQQVRYFRKLLSLNLSNNKFGESIPAEIGNVITLESLDLCQNMLTGEIPQQLGELQSLETLNLSHNNLSGTIPPTFDDLRGLTSINISYNQLEGPLPNLKAFRDAPFEALRNNKGLCGNITGLEACNTGKKKGNRFFLLIILLILSIPLLSFISYGIYFLRRMVRSRKINSREVATHQDLFAIWGHDGEMLYEHIIEGTEDFNSKNCIGTGGYGTVYKAELPTGRVVAVKKLHSTQDGEMADLKAFKSEIHALAEIRHRNIVKLYGFCSCSENSFLVYEFMEKGSLRNILSNKEEAMEFDWVLRLNVVKGMAEALSYMHHDCSPPLIHRDISSNNVLLDSEYVAHVSDFGTARLLKSDSSNWTSFAGTFGYIAPELAYGSKVDNKTDVYSFGVVTLEAIFGKHPGELISSLFSSASSSSSSPSTVYHLLLNEEIDQRLSPPMNQVAEEVVVAVKLALAC* 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1180 1199 SUPERFAMILY L domain-like 94 381 - -
Vvi13g1180 1199 SUPERFAMILY Protein kinase-like (PK-like) 928 1150 IPR011009 -
Vvi13g1180 1199 PANTHER LEUCINE RICH REPEAT KINASE 2 552 1199 - -
Vvi13g1180 1199 FunFam Probable leucine-rich repeat receptor-like protein kinase At1g35710 55 212 - -
Vvi13g1180 1199 ProSitePatterns Protein kinases ATP-binding region signature. 948 971 IPR017441 GO:0005524
Vvi13g1180 1199 SUPERFAMILY RNI-like 524 838 - -
Vvi13g1180 1199 Pfam Protein kinase domain 943 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1180 1199 FunFam MDIS1-interacting receptor like kinase 2 1021 1199 - -
Vvi13g1180 1199 PRINTS Leucine-rich repeat signature 795 808 - -
Vvi13g1180 1199 PRINTS Leucine-rich repeat signature 678 691 - -
Vvi13g1180 1199 ProSiteProfiles Leucine-rich repeat profile. 797 820 IPR001611 GO:0005515
Vvi13g1180 1199 SMART LRR_typ_2 795 818 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 747 771 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 531 554 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 339 362 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 291 314 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 483 507 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 387 411 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 627 650 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 651 675 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 603 626 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 195 219 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 243 267 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 459 482 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 699 723 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 555 579 IPR003591 -
Vvi13g1180 1199 SMART LRR_typ_2 122 146 IPR003591 -
Vvi13g1180 1199 Gene3D Ribonuclease Inhibitor 55 213 IPR032675 -
Vvi13g1180 1199 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 475 574 - -
Vvi13g1180 1199 Pfam Leucine rich repeat N-terminal domain 57 94 IPR013210 -
Vvi13g1180 1199 Pfam Leucine Rich Repeat 461 483 IPR001611 GO:0005515
Vvi13g1180 1199 Pfam Leucine Rich Repeat 557 579 IPR001611 GO:0005515
Vvi13g1180 1199 Gene3D Phosphorylase Kinase; domain 1 903 1020 - -
Vvi13g1180 1199 FunFam Leucine-rich repeat receptor protein kinase MSP1 904 1020 - -
Vvi13g1180 1199 ProSiteProfiles Leucine-rich repeat profile. 557 579 IPR001611 GO:0005515
Vvi13g1180 1199 ProSiteProfiles Leucine-rich repeat profile. 485 507 IPR001611 GO:0005515
Vvi13g1180 1199 FunFam Leucine-rich repeat receptor-like protein kinase TDR 580 868 - -
Vvi13g1180 1199 Gene3D Ribonuclease Inhibitor 478 575 IPR032675 -
Vvi13g1180 1199 Gene3D Ribonuclease Inhibitor 214 311 IPR032675 -
Vvi13g1180 1199 SUPERFAMILY L domain-like 313 621 - -
Vvi13g1180 1199 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1066 1078 IPR008266 GO:0004672|GO:0006468
Vvi13g1180 1199 FunFam Uncharacterized protein 324 474 - -
Vvi13g1180 1199 FunFam Leucine-rich receptor-like protein kinase family protein 213 310 - -
Vvi13g1180 1199 Gene3D Ribonuclease Inhibitor 583 869 IPR032675 -
Vvi13g1180 1199 Gene3D Ribonuclease Inhibitor 315 477 IPR032675 -
Vvi13g1180 1199 Pfam Leucine rich repeat 773 832 IPR001611 GO:0005515
Vvi13g1180 1199 Pfam Leucine rich repeat 605 664 IPR001611 GO:0005515
Vvi13g1180 1199 SMART LRR_sd22_2 795 821 - -
Vvi13g1180 1199 SMART LRR_sd22_2 291 323 - -
Vvi13g1180 1199 SMART LRR_sd22_2 555 581 - -
Vvi13g1180 1199 SMART LRR_sd22_2 339 357 - -
Vvi13g1180 1199 SMART LRR_sd22_2 483 509 - -
Vvi13g1180 1199 SMART LRR_sd22_2 675 701 - -
Vvi13g1180 1199 SMART LRR_sd22_2 627 653 - -
Vvi13g1180 1199 SMART LRR_sd22_2 243 275 - -
Vvi13g1180 1199 ProSiteProfiles Protein kinase domain profile. 942 1199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1180 1199 ProSiteProfiles Leucine-rich repeat profile. 389 411 IPR001611 GO:0005515
Vvi13g1180 1199 Gene3D Transferase(Phosphotransferase) domain 1 1021 1199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1180 Vvi-Chr13 19538330 19542477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1180 57 697 Receptor kinase-like Gene Family AT4G08850 40.089 5.98e-128 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi13g1180 Pkinase 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1180 - - vvi:100248982 1392.48