Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1179 ATGGCCCTTCAATATCTTTCATCCTATTCCTCACTCTCCCAACTCATCACCATTCTTTGCTTCTATATAATTCTTCATTTCCCTTTTTATTCATCGTCGTCATCATTTCATGTCTCTTCTACGTTTACTTTTACTCCTACCACTTCTTCTTTGATTATCGAGCAAGGAAAAGAAGCACTCACTCTTATAACATGGAAATCTAGCCTTCATACTCAATCACAATCTTTCCTTTCTTCTTGGTCTGGAGTTTCCCCATGCAATCATTGGTTTGGAGTTACTTGCCACAAGTCAGGAAGTGTCTCCAGTTTAAACCTTGAGAATTGTGGTCTAAGAGGTACGCTCCACAATTTTGATTTCTTTTCACTCCCTAATCTTCTCACTCTTAATCTTTCTAACAACTCCTTCTATGGAACCATTCCCACCAACATTGGTAATATTTCCAAATTGATCACCATCCTTGATTTGGGTTTGAATAATTTCAATGGCATCATACCTCACCAAGTTGGATTGTTAACATCTCTTAGTTTTCTTGCTTTGGCTACCAACCATCTAAGAGGTCCAATCCCTCATTCAATAGGAAACTTGAGGAACTTAACCACATTGTATCTTTATGAGAATGAGCTTTCTGGTTCGATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTCAGTTGTCAACTAACAATCTCAGTGGCCCCATCCCGCCTTCTATAGAAAACTTGAGGAATTTAACCACTTTGTACCTTTATCAGAATGAGTTTTCTGGTTCCATCCCTCAAGAAATTGGATTGTTGATATCTCTTAATTATCTTGCATTGTCAACTAACAATCTCAGTGGTCCCATCCTGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTTATCAGAATGAGCTTTCTGGTTTGATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTGAGTTGTCAACTAACAATCTTAGTGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTCATAGGAATGAGCTTTCTGGTTCGATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTCAGTTGTCAACTAACAATCTCAGTGGTCCCATCCCGCCTTCCATAGAAAACTTGAGGAATTTAACCACTTTGTACCTTTATCAGAATGAGCTTTCTGGTTCCATCCCTCAAGAAATTGGATTGTTGATATCTCTTAATTATCTTGCATTGTCAACTAACAATCTCAGTGGTCCCATCCTGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTTATCAGAATGAGCTTTTTGGTTTGATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTGAGTTGTCAACTAACAATCTTAGTGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTCATAGGAATGAGCTTTCTAGTTCTATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATAATCTTGCCTTGTCAACTAACAATCTCAGTGGTCCCATCCCGCCTTCCATAGGAAACTTGAGGAATTTAACCAATTTGTACCTTTATAATAATGAACTTTCTGGTCCCATCCCTCAAGAAATTGGATTGTTGAGATCTCTTATTGAACTTGACTTGTCTGATAACAATTTGACGGTCACTTTGTTTGTTCATTCCAATAAGCTTAATGGTTCCATCCCACAAGATATTCATTTGCTAAGTTCCCTCAGTGTTCTAGCCTTGTCAAATAACAATCTCTCTGGCATCATTCCTCATTCTTTAGGAAAATTAGGCAGCTTAACTGCCTTATACCTCCGAAATAACAGTCTTTCAGGTTCAATTCCTTACTCAATAGGAAACTTGTCCAAGTTAGATACTTTAGATCTTCATTCTAATCAACTTTTTGGTTCCATTCCTCGAGAAGTTGGATTTTTGAGGTCTCTTTTTGCTCTTGATTCGTCAAATAACAAACTCACTGGTTCAATCCCTACTTCCATAGGAAACTTGGTCAACTTAACTACTTTGCACATTTCCAAAAATCAGCTTTCTGGTTCCATACCTCAGGAAGTTGGATGGTTGAAATCCCTTGATAAACTTGACTTGTCTGATAACAAGATCACTGGTTCAATCCCTGCTTCCATAGGGAACTTGGGTAATTTAACTGTATTGTATCTTTCTGATAACAAAATCAATGGCTCAATTCCTCCTGAAATGAGACACCTTACACGTTTGAGATCTTTAGAGTTATCTGAGAATCATTTGACTGGCCAACTACCGCATGAGATATGTCTTGGTGGATGCAATAGTCTGACAAGCCTAAAAATCTCCAATAACAATATTTCTGGTATGATACCACATCAACTTGGGGAGGCAACCAAACTAGAACAACTTGACCTCTCTTCAAATCATCTTGTTGGGGAGATACCAAAAGAATTGGGTATGTTGAAGTCACTGTTCAATTTGGTGATAGACAACAACAAACTTTCAGGCAACATTCCTTTGGAATTTGGAAATTTGTCCGATCTCGTACATCTTAACTTGGCATCAAACCATTTAAGTGGCCCAATTCCCCAACAAGTCCGAAACTTTCGGAAATTGTTGTCCTTGAATTTGAGCAATAATAAGTTTGGGGAAAGCATTCCGGCTGAGATTGGGAATGTGATCACTCTTGAGAGTCTTGACCTTTGCCAAAATATGTTGACAGGAGAGATACCACAACAACTTGGAGAATTACAAAGCTTGGAAACATTGAATCTCTCCCATAACAACCTCTCAGGTACCATCCCACCCACTTTTGATGATTTGCGAGGCCTGACATCCATAAATATATCCTACAATCAGTTGGAAGGTCCGCTACCCAACCTCAAAGCATTTCGAGATGCCCCATTTGAGGCATTAAGAAATAACAAAGGTTTGTGTGGTAACATCACTGGTCTCGAGGCATGCAACACCGGCAAAAAGAAGGGGAACAAATTTTTTCTTTTGATTATACTCCTTATTTTGAGCATTCCATTGCTTTCATTTATTTCTTATGGAATTTATTTTCTTCGTCGAATGGTAAGGAGTAGAAAAATCAATTCTAGAGAAGTAGCAACTCATCAAGATCTATTCGCAATATGGGGCCATGATGGGGAAATGTTATATGAACACATCATTGAGGGGACTGAAGATTTTAACTCAAAAAATTGTATTGGCACCGGAGGATATGGAACTGTTTACAAGGCCGAGTTGCCTACAGGTCGAGTTGTTGCTGTGAAAAAACTTCACTCAACACAAGATGGAGAGATGGCTGATCTGAAAGCTTTCAAAAGTGAGATTCATGCTTTAGCAGAGATACGACATCGCAACATTGTCAAGCTTTATGGCTTTTGTTCATGTTCAGAAAACTCATTTTTGGTTTATGAGTTCATGGAAAAGGGAAGTTTGAGAAACATTCTAAGCAACAAGGACGAAGCAATAGAGTTTGATTGGGTTTTGAGGCTAAATGTTGTCAAAGGCATGGCTGAAGCTTTATCTTATATGCACCATGATTGCTCCCCTCCTTTAATTCACCGAGACATATCGAGCAACAATGTTCTGTTAGATTCAGAATATGTAGCTCATGTATCCGACTTCGGCACAGCTCGACTTCTGAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATATTGCTCCAGAACTTGCTTATGGCCCAAAGGTGGACAATAAAACAGATGTTTATAGCTTTGGAGTGGTAACATTGGAAACAATTTTTGGAAAGCATCCTGGGGAACTCATCTCATCGCTCTTTTCATCAGCGTCCTCGTCATCCTCATCACCATCAACTGTTTATCATTTACTGTTGAATGAAGAGATAGACCAACGTCTCTCACCTCCTATGAATCAAGTGGCTGAGGAAGTAGTGGTTGCAGTGAAGTTAGCACTTGCATGCTTGCATGCTAATCCCCAATCTCGACCAACCATGCGACAAGTTTGTCAAGCACTCTCAACACCGTGGCCGCCATTGTCAAAACCATTCTCCATGATTACTTTGGGCGAACTGCTTGGTCATGGAGGTGAAACTACTTGA 4134 0.3924 MALQYLSSYSSLSQLITILCFYIILHFPFYSSSSSFHVSSTFTFTPTTSSLIIEQGKEALTLITWKSSLHTQSQSFLSSWSGVSPCNHWFGVTCHKSGSVSSLNLENCGLRGTLHNFDFFSLPNLLTLNLSNNSFYGTIPTNIGNISKLITILDLGLNNFNGIIPHQVGLLTSLSFLALATNHLRGPIPHSIGNLRNLTTLYLYENELSGSIPQEIGLLRSLNDLQLSTNNLSGPIPPSIENLRNLTTLYLYQNEFSGSIPQEIGLLISLNYLALSTNNLSGPILPSIGNLRNLTTLYLYQNELSGLIPQEIGLLRSLNDLELSTNNLSGPIPPSIGNLRNLTTLYLHRNELSGSIPQEIGLLRSLNDLQLSTNNLSGPIPPSIENLRNLTTLYLYQNELSGSIPQEIGLLISLNYLALSTNNLSGPILPSIGNLRNLTTLYLYQNELFGLIPQEIGLLRSLNDLELSTNNLSGPIPPSIGNLRNLTTLYLHRNELSSSIPQEIGLLRSLNNLALSTNNLSGPIPPSIGNLRNLTNLYLYNNELSGPIPQEIGLLRSLIELDLSDNNLTVTLFVHSNKLNGSIPQDIHLLSSLSVLALSNNNLSGIIPHSLGKLGSLTALYLRNNSLSGSIPYSIGNLSKLDTLDLHSNQLFGSIPREVGFLRSLFALDSSNNKLTGSIPTSIGNLVNLTTLHISKNQLSGSIPQEVGWLKSLDKLDLSDNKITGSIPASIGNLGNLTVLYLSDNKINGSIPPEMRHLTRLRSLELSENHLTGQLPHEICLGGCNSLTSLKISNNNISGMIPHQLGEATKLEQLDLSSNHLVGEIPKELGMLKSLFNLVIDNNKLSGNIPLEFGNLSDLVHLNLASNHLSGPIPQQVRNFRKLLSLNLSNNKFGESIPAEIGNVITLESLDLCQNMLTGEIPQQLGELQSLETLNLSHNNLSGTIPPTFDDLRGLTSINISYNQLEGPLPNLKAFRDAPFEALRNNKGLCGNITGLEACNTGKKKGNKFFLLIILLILSIPLLSFISYGIYFLRRMVRSRKINSREVATHQDLFAIWGHDGEMLYEHIIEGTEDFNSKNCIGTGGYGTVYKAELPTGRVVAVKKLHSTQDGEMADLKAFKSEIHALAEIRHRNIVKLYGFCSCSENSFLVYEFMEKGSLRNILSNKDEAIEFDWVLRLNVVKGMAEALSYMHHDCSPPLIHRDISSNNVLLDSEYVAHVSDFGTARLLKSDSSNWTSFAGTFGYIAPELAYGPKVDNKTDVYSFGVVTLETIFGKHPGELISSLFSSASSSSSSPSTVYHLLLNEEIDQRLSPPMNQVAEEVVVAVKLALACLHANPQSRPTMRQVCQALSTPWPPLSKPFSMITLGELLGHGGETT* 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1179 1377 Gene3D Ribonuclease Inhibitor 637 713 IPR032675 -
Vvi13g1179 1377 Gene3D Transferase(Phosphotransferase) domain 1 1154 1354 - -
Vvi13g1179 1377 Gene3D Ribonuclease Inhibitor 213 306 IPR032675 -
Vvi13g1179 1377 FunFam MDIS1-interacting receptor like kinase 2 1154 1356 - -
Vvi13g1179 1377 ProSiteProfiles Protein kinase domain profile. 1075 1355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1179 1377 ProSiteProfiles Leucine-rich repeat profile. 341 363 IPR001611 GO:0005515
Vvi13g1179 1377 Pfam Protein kinase domain 1076 1348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1179 1377 ProSiteProfiles Leucine-rich repeat profile. 736 758 IPR001611 GO:0005515
Vvi13g1179 1377 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 570 780 - -
Vvi13g1179 1377 ProSiteProfiles Leucine-rich repeat profile. 712 734 IPR001611 GO:0005515
Vvi13g1179 1377 Pfam Leucine rich repeat N-terminal domain 57 94 IPR013210 -
Vvi13g1179 1377 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 781 1003 - -
Vvi13g1179 1377 SUPERFAMILY L domain-like 571 870 - -
Vvi13g1179 1377 Gene3D Ribonuclease Inhibitor 572 636 IPR032675 -
Vvi13g1179 1377 Gene3D Ribonuclease Inhibitor 55 212 IPR032675 -
Vvi13g1179 1377 Gene3D Ribonuclease Inhibitor 307 408 IPR032675 -
Vvi13g1179 1377 Pfam Leucine rich repeat 592 651 IPR001611 GO:0005515
Vvi13g1179 1377 Pfam Leucine rich repeat 712 771 IPR001611 GO:0005515
Vvi13g1179 1377 Pfam Leucine rich repeat 782 821 IPR001611 GO:0005515
Vvi13g1179 1377 Pfam Leucine rich repeat 906 965 IPR001611 GO:0005515
Vvi13g1179 1377 SUPERFAMILY RNI-like 306 570 - -
Vvi13g1179 1377 FunFam Leucine-rich repeat receptor protein kinase MSP1 1037 1153 - -
Vvi13g1179 1377 FunFam Uncharacterized protein 267 413 - -
Vvi13g1179 1377 SUPERFAMILY L domain-like 832 993 - -
Vvi13g1179 1377 Gene3D Ribonuclease Inhibitor 410 571 IPR032675 -
Vvi13g1179 1377 Gene3D Ribonuclease Inhibitor 714 1002 IPR032675 -
Vvi13g1179 1377 PRINTS Leucine-rich repeat signature 713 726 - -
Vvi13g1179 1377 PRINTS Leucine-rich repeat signature 928 941 - -
Vvi13g1179 1377 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 758 1351 - -
Vvi13g1179 1377 SMART LRR_sd22_2 614 640 - -
Vvi13g1179 1377 SMART LRR_sd22_2 531 563 - -
Vvi13g1179 1377 SMART LRR_sd22_2 435 467 - -
Vvi13g1179 1377 SMART LRR_sd22_2 291 323 - -
Vvi13g1179 1377 SMART LRR_sd22_2 387 402 - -
Vvi13g1179 1377 SMART LRR_sd22_2 734 766 - -
Vvi13g1179 1377 SMART LRR_sd22_2 928 954 - -
Vvi13g1179 1377 SMART LRR_sd22_2 710 731 - -
Vvi13g1179 1377 FunFam Probable leucine-rich repeat receptor-like protein kinase At1g35710 55 213 - -
Vvi13g1179 1377 SMART LRR_typ_2 638 662 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 531 554 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 555 575 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 243 267 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 291 314 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 339 363 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 809 832 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 590 613 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 483 507 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 686 710 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 435 459 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 734 757 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 195 219 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 387 411 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 928 951 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 880 904 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 856 879 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 614 637 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 122 146 IPR003591 -
Vvi13g1179 1377 SMART LRR_typ_2 758 782 IPR003591 -
Vvi13g1179 1377 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1199 1211 IPR008266 GO:0004672|GO:0006468
Vvi13g1179 1377 ProSitePatterns Protein kinases ATP-binding region signature. 1081 1104 IPR017441 GO:0005524
Vvi13g1179 1377 ProSiteProfiles Leucine-rich repeat profile. 930 953 IPR001611 GO:0005515
Vvi13g1179 1377 FunFam Uncharacterized protein 414 569 - -
Vvi13g1179 1377 SUPERFAMILY L domain-like 59 335 - -
Vvi13g1179 1377 SUPERFAMILY Protein kinase-like (PK-like) 1061 1350 IPR011009 -
Vvi13g1179 1377 ProSiteProfiles Leucine-rich repeat profile. 485 507 IPR001611 GO:0005515
Vvi13g1179 1377 Gene3D Phosphorylase Kinase; domain 1 1036 1153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1179 Vvi-Chr13 19525581 19530618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1179 52 818 Receptor kinase-like Gene Family AT5G07280 37.531 3.88e-105 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi13g1179 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1179 - - vvi:100248982 1783.46