Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1173 ATGGAGGACATCCTCGACGAGTTCAACACCGAAATGCTGCGACGCAAGCTGGCAGTGCAACCTCAGGCCGCCGTCGCCGCCACCACCAGCAAGGTATGGAGTCTCATCCCTACTTGCTGTACTAGTTTCACTCCCAGTCATGTTACTTTTAATGTTAGCATGGGGTCCAAGATCAAGGATATCACCAGCCGCTTGGAAGATATTTCCACTCGCAAAGCCCAACTGGGTTTGGAAAAGGTTGCAGGAACAACAACTACTACTTGGAAAAGAACACCCACCACATCTTTGTTTAATGAACCACAAGTTCATGGCAGAGATGATGACAAAAACAAGATCGTAGATTTGCTGCTCAGCGATGAATCTGCTGTTGTCCCCATCATTGGTATGGGTGGGTTGGGTAAAACCACATTGGCTAGATTTGCTTATAACGATGACGCGGTGGTGAAGCATTTTAGTCCAAGAGCATGGGTTTGTGTGTCTGATGAGTTTGATGTGGTGAAAATAACGAAGGCTATTCTCGGCGCCATCTCTCAACTGAGCAACGATTCCAACGATTTCAATAAACTCCAAGTTGAATTAAGCCAATCATTAGCTGGAAAAAGGTTTTTGCTTGTCCTGGATGATGTTTGGAACAAGAACTATGAAGATTGGAATAACTTGCGATCCCCTTTCAAGGGAGGGGCTAAAGGAAGTAAAGTCATAGTAACCACACGCAATACACATGTGGCATTAATGATGGAACCATCTGTTACCTACCACCACTCTCTTAAGCCTTTATCATATGATGACTGTTGGTCGGTATTTGTACAGCATGCATTTGAAAACAGAGACATCCAAGAACATCCGAATTTAAAATCAATAGGCAAGAAGATTGTTGAAAAGTGCGATGGCTTGCCGTTAGCAGCAAAGGTGCTTGGTGGTCTCTTACGCTCTAAACACCGAGACGATGAATGGGAGCATATATTGAATAGCAAAATTTGGATTTTACCGGATACCGAATGTGGCATCATTCCTGCATTGAGGTTGAGTTATCATCATCTTCCAGCGCAATTAAAAAGATGCTTTGTTTATTGCGCAACATTTCCTCAAGACTACGAATTTAAGGAAACTGAGCTAATCTTGTTATGGATGGCGGAGGGATTAATTCAACCATTGGAAGGAAATAAGCAAATGGAAGATTTAGGTGCTGAGTACTTTCGTGAATTGGTGTCAAGGTCATTTTTCCAACAGTCTGGAAATGGTGGATCACAATTCGTCATGCACGACCTCATTAGTGATCTTGCTCAATCAGTTGCTGGACAACTATGTTTCAATTTGGAGGATAAGTTGAAGCATGATAAGAACCATATCATTTTACAAGACACTCGCCATGTGTCATACAATCGTTATCGTCTTGAGATCTTTAAAAAATTTGAAGCTCTCAACGAAGTGGAGAAGTTACGAACATTTATAGCGTTACCAATTTATGGTAGACCTCTTTGGTGTAGCTTAACTAGTATGGTGTTTAGTTGCTTGTTCCCCAAACTAAGATATTTAAGAGTGCTATCTTTGAGTGGGTATTTTATAAAAGAGTTACTAAACTCAGTAGGAGATTTAAAGCATTTACGGTATCTTAATTTGTCCAGAACTGAAATTGAAAGGCTATCAGAATCGATAAGTGAGCTCTACAATTTACAAGCACTAATATTGCGTGAATGCCGTTCTCTTAGAATGCTACCTACGAGCATTGGGAATTTGGTTGATCTTCGACATCTGGATATTACCGATACACTGAGCTTAAAAAAGATGCCTCCGCACTTAGGTAACTTGGTAAATTTGCAAACACTACCAAAGTTTATCGTGGAGAAAAATAATAGCTCGTCAAGTATAAAAGAATTGAAGAAGTTGTCGAATATTAGAGGGACACTTTCCATTTTAGGGTTGCATAATGTGGCGGATGCTCAAGATGCAATGGATGTGGATTTGAAGGGGAAGCATAACATTAAAGATTTAACAATGGAATGGGGCAATGATTTTGATGATACTCGCAATGAACAGAATGAAATGCAAGTTTTGGAGTTGCTTCAACCCCATAAAAATCTGGAAAAACTCACCATCTCATTTTATGGTGGAGGAATATTCCCAAGTTGGATGAGGAACCCTTCATTCTCACTGATGGTGCAGTTGTGTCTCAAAGGTTGCAGAAACTGCACACTGTTACCATCTCTTGGGCAATTGTCCTCGCTCAAAAACTTGCGCATTGAAGGAATGAGTGGAATAAAAAATATAGATGTTGAGTTTTACGGGCAGAATGTGGAGTCTTTTCAATCGTTGGAGTCTCTAACCTTTTCGGATATGCCAGAGTGGGAAGAATGGCGTTCTCCCAGTTTCATTGATGATGAAAGATTATTTCCTCGCCTCCGTGAGCTTATGATGACGCAATGTCCAAAGTTGATTCCTCCGCTTCCAAAAGTTTTATCTCTCCATGAATTAAAATTAATAGCATGTAACGAAGTAGTGTTGGGCAGAATTGGAGTTGATTTCAACTCCCTTGCAGCTTTAGAAATTAGAGATTGCAAAGAGGTTAGATGGTTGAGATTAGAAAAGCTTGGCGGGCTGAAGCGTTTAAGGGTGTGTGGATGTGATGGACTCGTATCCTTGGAGGAGCCAGCTCTACCATGCAGTCTTGACTATCTGGAAATAGAAGGGTGTGAAAATCTTGAGAAGCTGCCAAATGAATTGCAAAGTCTCAGGTCAGCAACTGAGTTAGTAATCCGAAAGTGTCCGAAGCTTATGAACATTCTGGAGAAAGGGTGGCCGCCCATGCTAAGGAAACTTGAAGTGTATAATTGTGAGGGTATCAAGGCACTACCAGGTGATTGGATGATGATGAGGATGGATGGTGACAACACCAACTCCTCATGTGTCCTTGAAAGAGTGCAAATTATGAGGTGTCCATCTCTCCTTTTCTTTCCAAAAGGTGAATTACCCACCTCACTTAAACAACTGATAATTGAAGATTGTGAAAATGTCAAGTCCCTACCGGAGGGTATTATGCGCAATTGCAATCTCGAGCAGTTGAATATCGAGGGATGTTCATCTCTGACCTCATTTCCAAGTGGTGAGTTACCCTCCACCCTTAAGCACCTCGTCATTTGGAATTGTGGGAATCTGGAATTGCTGCCGGATCACATGCCCAACCTCACATATCTTAATATTAAGGGATGTAAGGGTCTCAAACATCATCACTTGCAAAACCTCACTTCTCTTGAATATCTGAAAATACGTGGATGTCCGAGTCTAGAGTCATTTCCGGAAGGGGGTTTGGGTTTCGCCCCCAACTTGAGAGATGTTGACATTACCGATTGTGAGAATCTGAAGACGCCTCTGTCAGAGTGGGGACTCAACAGGCTCCTCTCTCTCAAAAACCTCACCATTGCTCCAGGTGGATATCAAAATGTGGTTTCATTTTCACATGATCATGATGACTGCCACCTTCGTCTTCCTACATCTCTCACCCGTCTTCACATTGGAGATTTCCAGAATCTGGAATCCATGGCCTCCCTGCCTCTCCCGACCCTCATTTCCCTTGAAGATCTTTGTATCTCGGATTGTCCAAAGCTCCAGCAGTTTTTGCCAAAGGAAGGGCTGCCAGCAACACTCGGATATATTGAGATCCAGGGTTGTCCTATCATAGAAAAGAGGTGCTTAAAGGGCAGAGGAAAAGATTGGCCCCACGTTGCCCACATCCCCGCCATTCATATAGGCGGCAATTGA 3756 0.4239 MEDILDEFNTEMLRRKLAVQPQAAVAATTSKVWSLIPTCCTSFTPSHVTFNVSMGSKIKDITSRLEDISTRKAQLGLEKVAGTTTTTWKRTPTTSLFNEPQVHGRDDDKNKIVDLLLSDESAVVPIIGMGGLGKTTLARFAYNDDAVVKHFSPRAWVCVSDEFDVVKITKAILGAISQLSNDSNDFNKLQVELSQSLAGKRFLLVLDDVWNKNYEDWNNLRSPFKGGAKGSKVIVTTRNTHVALMMEPSVTYHHSLKPLSYDDCWSVFVQHAFENRDIQEHPNLKSIGKKIVEKCDGLPLAAKVLGGLLRSKHRDDEWEHILNSKIWILPDTECGIIPALRLSYHHLPAQLKRCFVYCATFPQDYEFKETELILLWMAEGLIQPLEGNKQMEDLGAEYFRELVSRSFFQQSGNGGSQFVMHDLISDLAQSVAGQLCFNLEDKLKHDKNHIILQDTRHVSYNRYRLEIFKKFEALNEVEKLRTFIALPIYGRPLWCSLTSMVFSCLFPKLRYLRVLSLSGYFIKELLNSVGDLKHLRYLNLSRTEIERLSESISELYNLQALILRECRSLRMLPTSIGNLVDLRHLDITDTLSLKKMPPHLGNLVNLQTLPKFIVEKNNSSSSIKELKKLSNIRGTLSILGLHNVADAQDAMDVDLKGKHNIKDLTMEWGNDFDDTRNEQNEMQVLELLQPHKNLEKLTISFYGGGIFPSWMRNPSFSLMVQLCLKGCRNCTLLPSLGQLSSLKNLRIEGMSGIKNIDVEFYGQNVESFQSLESLTFSDMPEWEEWRSPSFIDDERLFPRLRELMMTQCPKLIPPLPKVLSLHELKLIACNEVVLGRIGVDFNSLAALEIRDCKEVRWLRLEKLGGLKRLRVCGCDGLVSLEEPALPCSLDYLEIEGCENLEKLPNELQSLRSATELVIRKCPKLMNILEKGWPPMLRKLEVYNCEGIKALPGDWMMMRMDGDNTNSSCVLERVQIMRCPSLLFFPKGELPTSLKQLIIEDCENVKSLPEGIMRNCNLEQLNIEGCSSLTSFPSGELPSTLKHLVIWNCGNLELLPDHMPNLTYLNIKGCKGLKHHHLQNLTSLEYLKIRGCPSLESFPEGGLGFAPNLRDVDITDCENLKTPLSEWGLNRLLSLKNLTIAPGGYQNVVSFSHDHDDCHLRLPTSLTRLHIGDFQNLESMASLPLPTLISLEDLCISDCPKLQQFLPKEGLPATLGYIEIQGCPIIEKRCLKGRGKDWPHVAHIPAIHIGGN* 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1173 1251 PANTHER DISEASE RESISTANCE PROTEIN RP 33 849 IPR044974 GO:0006952
Vvi13g1173 1251 FunFam Probable disease resistance protein At1g61300 86 250 - -
Vvi13g1173 1251 Gene3D - 259 342 IPR042197 -
Vvi13g1173 1251 PRINTS Disease resistance protein signature 553 569 - -
Vvi13g1173 1251 PRINTS Disease resistance protein signature 196 210 - -
Vvi13g1173 1251 PRINTS Disease resistance protein signature 295 309 - -
Vvi13g1173 1251 PRINTS Disease resistance protein signature 123 138 - -
Vvi13g1173 1251 SUPERFAMILY L domain-like 419 856 - -
Vvi13g1173 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 358 IPR027417 -
Vvi13g1173 1251 Gene3D - 85 252 IPR027417 -
Vvi13g1173 1251 Pfam NB-ARC domain 106 323 IPR002182 GO:0043531
Vvi13g1173 1251 SUPERFAMILY L domain-like 813 952 - -
Vvi13g1173 1251 Gene3D - 343 431 IPR036388 -
Vvi13g1173 1251 SUPERFAMILY L domain-like 970 1239 - -
Vvi13g1173 1251 Gene3D Ribonuclease Inhibitor 493 875 IPR032675 -
Vvi13g1173 1251 FunFam Probable disease resistance protein At1g63360 344 430 - -
Vvi13g1173 1251 Gene3D Ribonuclease Inhibitor 1039 1150 IPR032675 -
Vvi13g1173 1251 Gene3D Ribonuclease Inhibitor 930 1038 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1173 Vvi-Chr13 19378661 19382416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1173 124 617 WRKY Transcription Factor Family AT5G45050 23.684 6.22e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1173 - - vvi:104881264 2264.57