Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1165 ATGGAGGTTGTTGGAGAGCTTCTTCTTTCTGCCGCCTTTCAAGTGCTGTTTGATAAGTTGGCCTCCTCTGATTTCCTCACCTTTGCCCGCCAAGAACACATTCATTCTCAACTCAAAAAGTGGGAGACCCAACTCTTCAATATTCGTGAAGTGCTCAACGACGCCGAGGATAAGCAGATTGCAAGTTCCTCTGTCAAACTCTGGCTTGCTGACCTCAGGATCTTGGCCTATGACATGGAGGACATCCTCGACGAGTTCAACACCGAAATGCTGCGACGCAAGCTGGCAGTGCAACCTCAGGCCGCCGCCGCCAGCAGCAAGGTATGGAGTCTCATCCCTACTTGCTGTACTAGTTTCGCTCCCAGTCATGTTACTTTTAATGTTAGCATGGGGTCCAAGATCAAGGATATCACCAGCCGCTTGGAAGATATTTCCACTCGCAAAGCCCAACTGGGTTTGGAAAAGGTTGCAGGAACAACAACTACTACTTGGAAAAGAACACCCACCACATCTTTGTTTAATGAACCACAAGTTCATGGCAGAGACGATGACAAAAACAAGATCGTAGATTTGCTGCTCAGCGATGAATCTGCTGTTGTCCCCATCGTTGGTATGGGCGGGTTGGGTAAAACCACATTAACCAGACTTGCGTATAACGATGATGCGGTGGTGAAGCATTTTAGTCCAAGAGCATGGGTTTGTGTGTCTGTTGAGTCTGATGTGGAGAAAATAACAAAGGCTATTCTCAGCGACATCTCTCCCCAGAGCAGCGATTTCAACAATTTCAATCGACTCCAAGTTGAATTAAGCCAATCATTAGCTGGAAAAAGGTTTTTGCTTGTCCTGGATGATGTTTGGAACATGAACTATGAAGATTGGAATAACTTGCGATCCCCTTTCAGGGGAGGGGCTAAAGGAAGTAAAGTCATAGTAACCACACGTGATCGAGGAGTGGCATTAATAATGCAACCATCTGATAACTACCACCACTCTCTTGAGCCTTTATCAGACGATGACTGCTGGTCAATATTTGTACAACATGCATTTGAAAACAGAGACATCCAAGAACATCCGAATTTAAAATCAATAGGCAAGAAGATTGTTGAAAAGTGCCGTGGTTTGCCGTTAGCAGCAAAGGTGCTTGGTGGTATCTTACGCTCCAAACAGCGAGACAATGAATGGGAGCATATATTGAATAGCAAAATTTGGACCTTACCAGATACTGAATGTGGCATCATTCCTGCATTACGGTTGAGTTATCATCATCTTCCAGCGCAACTAAAAAGATGCTTTGTTTATTGCGCAACATTTCCTCAAGACTACGAATTTAGGGAAACTGAGCTAGTTTTGTTATGGATGGCAGAGGGATTAATTCAACCATTGGAAGGAAATAAGCAAATGGAAGATTTAGGTGGTGAGTACTTTCGTGAATTGGTGTCGAGGTCATTTTTCCAACAGTCTGGAAATGGTGGATCACGATTCGTCATGCACGACCTCATTAGTGATCTTGCTCAATCAGTTGCTGGAGAACTATGTTGCAATTTGGAGGATAAGTTGAAGCATGATAAGAACCATACCATTTTACAAGACACTCGCCATGTGTCATACAATCGTTGTTATTTTGGGATCTTTAAAAAATTTGAAGCTCTCGAGGAAGTGGAGAAGTTACGAACATTTATAGTGTTACCAATTTATCATGGATGGGGTTACTTAACTAGTAAGGTGTTTAGTTGCTTGTTCCCCAAACTAAGATATTTAAGAGTGCTATCTTTGAGTGGGTATTCTATAAAAGAGTTACCAAACTCAGTCCGAGATTTAAAGCATTTACGATATCTTAATTTGTCCAGAACTGCAATTGAAAGGTTACCAGAATCGATAAGTGAGCTCTACAATTTACAATCCTTAATATTGTGTCAATGTCAATATCTTGCAATGTTACCTAAGAGCATCGGGAATTTGGTTGATCTTCGACATTTGGATATTACCTATACAATGAGCTTAAAAAAGATGCCTCCGCACTTAGGTAACTTGGTAAATTTGCAAACACTATCAAAGTTTATCGTGGAGAAAAATAATAGCTCATCAAGTATAAAAGAATTGAAGAAGTTGCCGAACATTAGAGGGACACTTTCCATTTTAGGGTTGCATAATGTGGCGGATGCTCAAGATGCAATGGATGTGGATTTGAAGGGGAAGCATAACATTAAAGATTTAACAATGGAATGGGGCAATGATTTTGATGATACTCGCAATGAACAGAATGAAATGCAAGTTTTGGAGTTGCTTCAACCCCATAAAAATCTGGAAAAACTCACCATCTCATTTTATGGTGGAGGAATATTCCCAAGTTGGATGAGGAACCCTTCATTCTCACTGATGGTGCAGTTGTGTCTCGAAGGTTGCAGAAACTGCACACTGTTACCATCTCTTGGGCAATTGTCCTCGCTCAAAAACTTGCGCATTGAAGGAATGAGTGGAATAAAAAATATAGATGTTGAATTTTACGGGCAGAATGTGGAGTCTTTTCAATCGTTGGAGTCTCTAACCTTTTCGGATATGCCAGAGTGGGAAGAATGGCGTTCTCCCAGTTTCATTGATGAAGAGAGATTATTTCCTCGCCTCCGTAAGCTTACGATGACGCAATGTCCAAAATTGGCTGGGAAGTTACCCAGTTCGTTAAGTTCCCTCGTAAAGCTAGAGATAGTGGAATGTTCGAAGTTGATTCCTCCGCTTCCAAAAGTTTTATCTCTCCATGAATTAAAATTAAAAGCATGTAACGAAGAAGTGTTGGGCAGAATTGCAGCTGATTTCAACTCCCTTGCAGCGTTGGAAATTGGAGATTGCAAAGAGGTGAGATGGTTGAGATTAGAAAAGCTCGGCGGGCTGAAGCGTTTAAAGGTGCGTGGATGTGATGGACTCGTATCCTTGGAGGAGCCAGCTCTACCATGCAGTCTTGAATATCTGGAAATAGAAGGGTGTGAAAATATTGAGAAGCTGCCAAATGAATTGCAAAGTCTCAGGTCAGCAACTGAGTTAGTAATCGGAAAGTGTCCGAAGCTTATGAACATTCTGGAGAAAGGGTGGCCGCCCATGCTAAGGAAACTTAGAGTGTATGGTTGTGAGGGTATCAAGGCACTACCAGGTGATTGGATGATGATGAGGATGGATGGTGACAACACCAACTCCTCATGTGTCCTTGAAAGAGTGCAAATTATGAGGTGTCCATCTCTCCTTTTCTTTCCAAAAGGTGAATTACCCACCTCACTTAAACAACTGATAATTGAAGATTGTGAAAATGTCAAGTCCCTACCGGAGGGTATTATGGGCAATTGCAATCTCGAGCAGTTAAATATCTGCGGATGTTCATCTCTGACGTCATTTCCAAGTGGTGAGTTACCCTCCACCCTTAAGCACCTCGTCATTTCGAATTGTGGGAATCTGGAATTGCTGCCGGATCACATGCCCAACCTCACATATCTTGAAATTAAGGGATGTAAGGGTCTCAAACATCATCACTTGCAAAACCTCACTTCTCTTGAATGCCTGTATATAATTGGATGTCCGATTATAGAGTCATTACCGGAAGGGGGGCTACCAGCAACACTCGGATGGCTTCAGATCCGGGGTTGTCCTATCATAGAAAAGAGGTGCTTAAAGGGCAGAGGAGAAGATTGGCCCCGCATTGCCCACATCCCCGACATTCATATAGGCGGCAATTGA 3720 0.4258 MEVVGELLLSAAFQVLFDKLASSDFLTFARQEHIHSQLKKWETQLFNIREVLNDAEDKQIASSSVKLWLADLRILAYDMEDILDEFNTEMLRRKLAVQPQAAAASSKVWSLIPTCCTSFAPSHVTFNVSMGSKIKDITSRLEDISTRKAQLGLEKVAGTTTTTWKRTPTTSLFNEPQVHGRDDDKNKIVDLLLSDESAVVPIVGMGGLGKTTLTRLAYNDDAVVKHFSPRAWVCVSVESDVEKITKAILSDISPQSSDFNNFNRLQVELSQSLAGKRFLLVLDDVWNMNYEDWNNLRSPFRGGAKGSKVIVTTRDRGVALIMQPSDNYHHSLEPLSDDDCWSIFVQHAFENRDIQEHPNLKSIGKKIVEKCRGLPLAAKVLGGILRSKQRDNEWEHILNSKIWTLPDTECGIIPALRLSYHHLPAQLKRCFVYCATFPQDYEFRETELVLLWMAEGLIQPLEGNKQMEDLGGEYFRELVSRSFFQQSGNGGSRFVMHDLISDLAQSVAGELCCNLEDKLKHDKNHTILQDTRHVSYNRCYFGIFKKFEALEEVEKLRTFIVLPIYHGWGYLTSKVFSCLFPKLRYLRVLSLSGYSIKELPNSVRDLKHLRYLNLSRTAIERLPESISELYNLQSLILCQCQYLAMLPKSIGNLVDLRHLDITYTMSLKKMPPHLGNLVNLQTLSKFIVEKNNSSSSIKELKKLPNIRGTLSILGLHNVADAQDAMDVDLKGKHNIKDLTMEWGNDFDDTRNEQNEMQVLELLQPHKNLEKLTISFYGGGIFPSWMRNPSFSLMVQLCLEGCRNCTLLPSLGQLSSLKNLRIEGMSGIKNIDVEFYGQNVESFQSLESLTFSDMPEWEEWRSPSFIDEERLFPRLRKLTMTQCPKLAGKLPSSLSSLVKLEIVECSKLIPPLPKVLSLHELKLKACNEEVLGRIAADFNSLAALEIGDCKEVRWLRLEKLGGLKRLKVRGCDGLVSLEEPALPCSLEYLEIEGCENIEKLPNELQSLRSATELVIGKCPKLMNILEKGWPPMLRKLRVYGCEGIKALPGDWMMMRMDGDNTNSSCVLERVQIMRCPSLLFFPKGELPTSLKQLIIEDCENVKSLPEGIMGNCNLEQLNICGCSSLTSFPSGELPSTLKHLVISNCGNLELLPDHMPNLTYLEIKGCKGLKHHHLQNLTSLECLYIIGCPIIESLPEGGLPATLGWLQIRGCPIIEKRCLKGRGEDWPRIAHIPDIHIGGN* 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1165 1239 Gene3D - 334 418 IPR042197 -
Vvi13g1165 1239 FunFam Probable disease resistance protein At1g63360 420 506 - -
Vvi13g1165 1239 Pfam NB-ARC domain 182 399 IPR002182 GO:0043531
Vvi13g1165 1239 SUPERFAMILY L domain-like 871 1211 - -
Vvi13g1165 1239 Gene3D - 11 124 - -
Vvi13g1165 1239 Gene3D Ribonuclease Inhibitor 548 952 IPR032675 -
Vvi13g1165 1239 Pfam Rx N-terminal domain 9 101 IPR041118 -
Vvi13g1165 1239 Gene3D Ribonuclease Inhibitor 1133 1218 IPR032675 -
Vvi13g1165 1239 Gene3D Ribonuclease Inhibitor 1027 1132 IPR032675 -
Vvi13g1165 1239 PRINTS Disease resistance protein signature 891 907 - -
Vvi13g1165 1239 PRINTS Disease resistance protein signature 371 385 - -
Vvi13g1165 1239 PRINTS Disease resistance protein signature 272 286 - -
Vvi13g1165 1239 PRINTS Disease resistance protein signature 199 214 - -
Vvi13g1165 1239 Gene3D - 161 327 IPR027417 -
Vvi13g1165 1239 FunFam Probable disease resistance protein At1g61300 162 327 - -
Vvi13g1165 1239 SUPERFAMILY L domain-like 495 905 - -
Vvi13g1165 1239 Gene3D - 419 507 IPR036388 -
Vvi13g1165 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 434 IPR027417 -
Vvi13g1165 1239 PANTHER DISEASE RESISTANCE PROTEIN RP 40 859 IPR044974 GO:0006952
Vvi13g1165 1239 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1165 Vvi-Chr13 19253666 19257709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1165 200 830 WRKY Transcription Factor Family AT5G45050 22.965 3.48e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1165 - - vvi:100260835 2393.62