Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1160 ATGGAGGTTGTTGGAGAGCTTCTTCTTTCTGCCGCCTTGCAAGTGCTGTTTGATAAGTTGGCCTCCTCTGATTTCCTCAGCTTTGCCCGACAAGAACACATTCATTCTCAACTCAAAAAGTGGGAGACCCAACTCTTCAATATTCGTGAAGTGCTCAACGACGCCGAGGATAAGCAGAATGAAAGTACCTCTGTCAAACTCTGGCTTGCTGAGCTCAGGATCTTGGCGTATGACATGGAGGACATCCTCGACGAGTTCAACACCGAAATGCTGCGACGCAAGCTGGCAGTGCAACCTCAGGCGGCTGCCGCCTCCACGAGCAAGGTATGGAGTCTCATCCCTTCTTGCTGTACTAGTTTCACTCCCAGTCATGTTACTTTTAATGTTAGCATGGGATCCAAGATCAAGGATATCACCAGCCGCTTGGAAGATATTTCCACTCGCAAAGCCGAACTGCGTTTGAAAAAGGTTGCAGGAACGACTACTACTTGGAAAAGAACACCCACCACATCTTTGTTTAATGAACCACAAGTTCATGGCCGAGATGATGACAAAAACAAGATGGTAGATTTGCTGCTCAGCGATGAATCTGCTGTTGTCCCCATCGTTGGTATGGGCGGGTTGGGTAAAACCACATTAGCCAGACTTGCGTATAACGATGATGCGGTGGTGAAGCATTTTAGTCCAAGAGCATGGGTTTGTGTGTCTGTTGAGTCTGATGTGGAGAAAATAACAAAGGCTATTCTCAGCGACATCTCTCCCCAGAGCAGCGATTCCAACAATTTCAATCGACTCCAAGTTGAATTAAGCCAATCATTAGCTGGAAAAAGGTTTTTGCTTGTCCTGGATGATGTTTGGAACATGAACTATGATAATTGGAATGACTTGCGATCCCCTTTCAGGGGAGGGGCTAAAGGAAGTAAAGTCATAGTAACCACACGTGATCGAGGAGTGGCATTAATAATGCAACCATCTGTTAACTACCACCACTCTCTTGAGCGTTTATCAGGCGATGACTGCTGGTCGATATTTGTACAACATGCATTTGAAAACAGAGACATCCAAAAACATCCCAATTTAAAATCAATAGGCAAGAAGATTGTGGAAAAGTGCGATGGTTTGCCGTTAGCAGCAAAGGTGCTTGGTGGCCTCTTACGCTCCAAGCAGCGAGACGATGAATGGGAGCATATATTGAATAGCAAAATTTGGACCTTACCAGAATGTGGCATCATTCCTGCATTACGGTTGAGTTATCATCATCTTCCAGCGCAACTAAAAAGATGCTTTGTTTATTGCGCAACATTTCCTCAAGACTACGAATTTAGGGAAACTGAGCTAGTTTTGTTATGGATGGCAGAGGGATTAATTCAACCATTGGAAGGAAATAAGCAAATGGAAGATTTAGGTGCTGAGTACTTTCGTGAATTGGTGTCGAGGTCATTTTTCCAACAGTCTGGAAATGGTGGATCACAATTCGTCATGCACGACCTCATTAGTGATCTAGCTCAATCAGTTGCTGCACAACTATGTTTCAATTTGGAGGATAAGTTGGAGCATAATAAGAACCATATCATTTCACGAGACACTCGCCATGTGTCATTCAATCGTTGTTTTGATGAGATCTTTAAAAAATTTGAAGCTCTCAACGAAGTGGAGAAGTTACGAACATTTATAGCGTTACCAATTTATGTTGGACCTTTTTTTGGACCGTGCCATTTAACTAGTAAGGTGTTTAGTTGCTTGTTCCCCAAACTAAGATATTTAAGAGTGCTATCTTTGAGTGGGTATTGGATAAAAGAGTTGCCAAACTCAATTGGAGATTTAAAGCATTTACGATATCTTAATTTTTCCAATACATTTATTGAAAGGCTACCAGAATCGATAAGTGAGCTCTACAATTTACAAGCCTTAATATTGTGTCAATGTCGATATCTTGCAATGTTACCTAAGAGCATCGGGAATTTGGTTAATCTTCGACATCTGGATATTACTGATACAAGGAGCTTAAAGAAGATGCCTCCACACATAAGTAACTTGGTAAATTTGCAAACACTATCAAAATTTATGGTGGAGAAAAATAATAGCTCATCAAGTATAAAAGAATTGAAGAAGTTGTCGAATATTAGAGGGACACTTTCCATTTTAGGGTTGCATAATGTGGCGGATGCTCAAGATGCAATGGATGTGGATTTGAAGGGGAAGCATAACATTAAAGATTTAACAATGGAATGGGGCTATGATTTTGATGATACTCGCAATGAAAAGAATGAAATGCAAGTTTTGGAGTTGCTTCAACCTCATAAAAATCTGGAAAAACTCACCATCTCATTTTATGGTGGAGGAATATTCCCAAGTTGGATTGGGAACCCTTCATTCTCACTGATGGTGCAGTTGTGTCTCAAAGGTTGCAGAAACTGCACACTGTTACCATCTCTTGGGCAATTGTCCTCGCTCAAAAACTTGCGCATTCAAGGAATGAGTGGAATAAAAAATATAGATGTTGAGTTTTACGGGCCGAATGTGGAGTCTTTTCAATCGTTGGAGTCTCTAACCTTTTCGGATATGCCAGAGTGGGAAGAATGGCGTTCTCCCAGTTTCATTGATGAAGAGAGATTATTTCCTCGCCTCCGTGAGCTTAAGATGATGGAATGTCCAAAGTTGATTCCTCCGCTTCCAAAAGTTTTACCTCTCCATGAATTAAAATTAGAAGCATGTAACGAAGAAGTGTTGGGCAGAATTGCAGCTGATTTCAACTCCCTTGCAGCGTTGGAAATTGGAGATTGCAAAGAGGTGAGATGGTTGAGATTAGAAAAGCTCGGCGGGCTGAAGCGTTTAAAGGTGCGTGGATGTGATGGACTCGTATCCTTGGAGGAGCCAGCTCTACCATGCAGTCTTGAATATCTGGAAATAGAAGGGTGTGAAAATCTTGAGAAGCTGCCAAATGAATTGCAAAGTCTCAGGTCAGCAACTGAGTTAGTAATCCGAGAGTGTCCGAAGCTTATGAACATTCTGGAGAAAGGGTGGCCGCCCATGCTAAGGGAACTTCGAGTGTATGATTGTAAGGGTATCAAGGCACTACCAGGTGATTGGATGATGATGAGGATGGATGGTGACAACACCAACTCCTCATGTGTCCTTGAAAGAGTGGAAATTTGGTGGTGTCCATCTCTCCTTTTCTTTCCAAAAGGTGAATTACCCACCTCACTTAAACGACTGATAATTCGATTTTGTGAAAATGTCAAGTCCCTACCGGAGGGTATTATGCGCAATTGCAATCTCGAGCAGTTGTATACTGGGAGATGTTCATCTCTGACCTCATTTCCAAGTGGTGAGTTACCCTCCACCCTTAAGCGCCTCAGCATTTGGAATTGTGGGAATCTGGAATTGCCGCCGGATCACATGCCCAACCTCACATATCTTAATATTGAGGGATGTAAGGGTCTCAAACATCATCACTTGCAAAACCTCACTTCTCTTGAACTTCTGTATATAATTGGATGTCCCAGTCTAGAGTCATTACCGGAAGGGGGTTTGGGTTTCGCCCCCAACTTGAGATTTGTTACAATTGTCAATTGTGAGAAGCTGAAGACGCCTCTGTCAGAGTGGGGACTCAACAGGCTCCTCTCTCTCAAAGACCTCACCATTGCTCCAGGTGGATATCAAAATGTGGTTTCATTTTCACATGGTCATGATGACTGCCACCTTCGTCTTCCTACATCTCTCACCGATCTTCACATTGGAAATTTCCAGAATCTGGAATCCATGGCCTCCCTGCCTCTCCCGACCCTCGTCTCCCTTGAACGTCTTTATATCCGGAATTGTCCAAAGCTCCAGCAGTTTTTGCCAAAGGAAGGGCTGCCGGCAACACTCGGTTGGCTTGAGATCTGGGGTTGTCCTATCATAGAAAAGAGGTGCTTAAAGAACGGAGGAGAAGATTGGCCCCACATTGCCCACATCCCCGTCATTGATATAGGCCGCAATTGA 3984 0.4315 MEVVGELLLSAALQVLFDKLASSDFLSFARQEHIHSQLKKWETQLFNIREVLNDAEDKQNESTSVKLWLAELRILAYDMEDILDEFNTEMLRRKLAVQPQAAAASTSKVWSLIPSCCTSFTPSHVTFNVSMGSKIKDITSRLEDISTRKAELRLKKVAGTTTTWKRTPTTSLFNEPQVHGRDDDKNKMVDLLLSDESAVVPIVGMGGLGKTTLARLAYNDDAVVKHFSPRAWVCVSVESDVEKITKAILSDISPQSSDSNNFNRLQVELSQSLAGKRFLLVLDDVWNMNYDNWNDLRSPFRGGAKGSKVIVTTRDRGVALIMQPSVNYHHSLERLSGDDCWSIFVQHAFENRDIQKHPNLKSIGKKIVEKCDGLPLAAKVLGGLLRSKQRDDEWEHILNSKIWTLPECGIIPALRLSYHHLPAQLKRCFVYCATFPQDYEFRETELVLLWMAEGLIQPLEGNKQMEDLGAEYFRELVSRSFFQQSGNGGSQFVMHDLISDLAQSVAAQLCFNLEDKLEHNKNHIISRDTRHVSFNRCFDEIFKKFEALNEVEKLRTFIALPIYVGPFFGPCHLTSKVFSCLFPKLRYLRVLSLSGYWIKELPNSIGDLKHLRYLNFSNTFIERLPESISELYNLQALILCQCRYLAMLPKSIGNLVNLRHLDITDTRSLKKMPPHISNLVNLQTLSKFMVEKNNSSSSIKELKKLSNIRGTLSILGLHNVADAQDAMDVDLKGKHNIKDLTMEWGYDFDDTRNEKNEMQVLELLQPHKNLEKLTISFYGGGIFPSWIGNPSFSLMVQLCLKGCRNCTLLPSLGQLSSLKNLRIQGMSGIKNIDVEFYGPNVESFQSLESLTFSDMPEWEEWRSPSFIDEERLFPRLRELKMMECPKLIPPLPKVLPLHELKLEACNEEVLGRIAADFNSLAALEIGDCKEVRWLRLEKLGGLKRLKVRGCDGLVSLEEPALPCSLEYLEIEGCENLEKLPNELQSLRSATELVIRECPKLMNILEKGWPPMLRELRVYDCKGIKALPGDWMMMRMDGDNTNSSCVLERVEIWWCPSLLFFPKGELPTSLKRLIIRFCENVKSLPEGIMRNCNLEQLYTGRCSSLTSFPSGELPSTLKRLSIWNCGNLELPPDHMPNLTYLNIEGCKGLKHHHLQNLTSLELLYIIGCPSLESLPEGGLGFAPNLRFVTIVNCEKLKTPLSEWGLNRLLSLKDLTIAPGGYQNVVSFSHGHDDCHLRLPTSLTDLHIGNFQNLESMASLPLPTLVSLERLYIRNCPKLQQFLPKEGLPATLGWLEIWGCPIIEKRCLKNGGEDWPHIAHIPVIDIGRN* 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1160 1327 Pfam Rx N-terminal domain 9 102 IPR041118 -
Vvi13g1160 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 432 IPR027417 -
Vvi13g1160 1327 SUPERFAMILY L domain-like 493 927 - -
Vvi13g1160 1327 CDD RX-CC_like 11 146 IPR038005 -
Vvi13g1160 1327 Gene3D - 334 416 IPR042197 -
Vvi13g1160 1327 Gene3D - 161 328 IPR027417 -
Vvi13g1160 1327 Gene3D - 417 505 IPR036388 -
Vvi13g1160 1327 PANTHER DISEASE RESISTANCE PROTEIN RP 41 903 IPR044974 GO:0006952
Vvi13g1160 1327 Gene3D - 11 124 - -
Vvi13g1160 1327 SUPERFAMILY L domain-like 1046 1317 - -
Vvi13g1160 1327 Gene3D Ribonuclease Inhibitor 1113 1202 IPR032675 -
Vvi13g1160 1327 Gene3D Ribonuclease Inhibitor 1007 1112 IPR032675 -
Vvi13g1160 1327 Coils Coil 135 155 - -
Vvi13g1160 1327 PRINTS Disease resistance protein signature 653 669 - -
Vvi13g1160 1327 PRINTS Disease resistance protein signature 199 214 - -
Vvi13g1160 1327 PRINTS Disease resistance protein signature 371 385 - -
Vvi13g1160 1327 PRINTS Disease resistance protein signature 272 286 - -
Vvi13g1160 1327 FunFam Probable disease resistance protein At1g63360 418 504 - -
Vvi13g1160 1327 FunFam Probable disease resistance protein At1g61300 162 326 - -
Vvi13g1160 1327 SUPERFAMILY L domain-like 888 1034 - -
Vvi13g1160 1327 Gene3D Ribonuclease Inhibitor 570 951 IPR032675 -
Vvi13g1160 1327 Coils Coil 38 58 - -
Vvi13g1160 1327 Pfam NB-ARC domain 182 399 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1160 Vvi-Chr13 19161292 19165275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1160 200 683 WRKY Transcription Factor Family AT5G45050 23.886 1.79e-14 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1160 - - vvi:100257485 2661.71