Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1144 ATGTCCACCGCCACTCCGCCGGAGTCTGCTGCTGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTTAGCATCCTCGTCCTCATCTCGACGATCATGCTCGCCTCCTATGCCTGCGTCAGAGTCAAAGCTAGCGGCGGCACTCGCGCTGACCACGGCAGACCAGGAACGAATCGCGAGTCCACCGCCGTCGATTTGTCGGAGCTAGCAGCGGTGGTGGTTGTGGCGGGCCTAGATGGCCCGGCAATAGAGTCGTATCCGAAGATGGTACTGGGCCAGAGCCGGCGGCTGCCGAGGCCCAACGACGGCCCGTGCTCCATCTGCCTGTCGGAGTACCGTCCCAACGAGACCGTCCGGTCTATTCCGGAGTGCAACCACTGCTTCCACGCCGATTGCATCGACGAGTGGCTTCGGATGAGCGCCACGTGCCCCATCTGCAGAAGCTCTCCGGCGGTCTCGGCGGCTCCGACGCCGCTCGCCACTCCTCTCTCCGAGGTGGTGCCTCTCGCCTTCCACGCCAGAAGCAATGTAGGGCAAGTAAAGTACAAATTAATGATGATATTAGCTTCCAATTAA 576 0.6198 MSTATPPESAAGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGTNRESTAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNETVRSIPECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHARSNVGQVKYKLMMILASN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1144 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 151 IPR013083 -
Vvi13g1144 191 SMART ring_2 105 146 IPR001841 -
Vvi13g1144 191 Pfam Ring finger domain 105 147 IPR001841 -
Vvi13g1144 191 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vvi13g1144 191 PANTHER RING-H2 FINGER PROTEIN ATL67 5 173 IPR044289 GO:0016567|GO:0016740
Vvi13g1144 191 CDD RING-H2_EL5-like 105 147 - -
Vvi13g1144 191 SUPERFAMILY RING/U-box 99 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1144 Vvi-Chr13 18797445 18798193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1144 1 174 C3H Transcription Factor Family AT5G07040 63.218 5.83e-69 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1144 - - vvi:100253964 350.132