Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1138 ATGGAATTGAAGAGATGCTGTGGCGGCTTTTTACACTCCAGCAAACCTTACTTGGCCATGATCTCCCTGCAGTTTGGATATGCAGGGATGAATATTATCACTAAGGTTTCTCTCAACCATGGGATGAGCCACTATGTTCTGGTGGTTTACAGGCATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCCGACCTTCTCATGCGCAATGAGCAATATGCTTCCGGCCATGACATTCGTCATGGCGGTCATATTCCGAATGGAGAAAATAGACATGAAGAGAGTAAGGTGCCAAGCAAAGGTTGTTGGGACTATTGTGACAGTGGCTGGGGCAATGGTGATGACCTTGTACAAGGGACCCATCATGGAGATGGTGTGGACTAAGCACATGCATACTTCCAAATCGGTGGGTTCGGGCACCACTTCTACCGACAAAGACTGGTTCATGGGGTCAATCTTCGTCATCATTGCAACACTTGCCTGGGCTTCTTTGTTCGTTTTACAGGCGCATGCATTGAAGACATACAAGCACCATCAGCTCTCTCTCACTACCCTTATTTGCTTTATTGGCACTCTACAAGCCATTGCTGTCACCTTTGTTATGGAACATAAAACCTCTGTTTGGACAATTGGCTGGGACATGAATCTCCTTGCAGCTGCCTATGCGGGTATTGTGACATCAAGTATTTCATACTATGTCCAAGGATTGGTGATAAAGTCAAGAGGCCCTGTGTTTGCTACTGCTTTTAGCCCTTTGATGATGATCATTGTAGCCATCATGGGCTCCTTCATCCTCGCAGAAAAGATATTCCTTGGAGGTGTTCTTGGGGCCATCTTGATTGTTGCTGGCCTTTACTCAGTTCTATGGGGAAAGTACAAGGAGAACTTGGAGAAGAAGCAGGAGGAGGAGATACCCGAAGCCATAAAAGGCGCTCAGGGCAACGGCAATGGGCTGTCTATAATCGACGACATCCAAACAAATGATATTGAAATGCAGAAAGCAGAAGCTAAGAAGCTCTCTTCTGTCGCCATTAGCATGCCAATTCCAGAACCTCCTATGAAGGCAAACCAAGACCCAAAAGCCTAA 1212 0.4629 MELKRCCGGFLHSSKPYLAMISLQFGYAGMNIITKVSLNHGMSHYVLVVYRHAFATAVIAPFAIFLERKAQPKITFRVFMQIFVLALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFVMAVIFRMEKIDMKRVRCQAKVVGTIVTVAGAMVMTLYKGPIMEMVWTKHMHTSKSVGSGTTSTDKDWFMGSIFVIIATLAWASLFVLQAHALKTYKHHQLSLTTLICFIGTLQAIAVTFVMEHKTSVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVIKSRGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGVLGAILIVAGLYSVLWGKYKENLEKKQEEEIPEAIKGAQGNGNGLSIIDDIQTNDIEMQKAEAKKLSSVAISMPIPEPPMKANQDPKA* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1138 403 PANTHER WAT1-RELATED PROTEIN 15 341 IPR030184 GO:0016020|GO:0022857
Vvi13g1138 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 334 - -
Vvi13g1138 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
Vvi13g1138 403 Pfam EamA-like transporter family 191 330 IPR000620 GO:0016020
Vvi13g1138 403 Pfam EamA-like transporter family 16 157 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1138 Vvi-Chr13 18659621 18661627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1138 1 401 Nodulin-like Gene Family AT5G07050 67.971 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1138 - - vvi:100266045 790.415