Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1136 ATGTCCTCATGTCAATCTCCCGGCACTCCCCTCCCCTCCCCATCCTGCCATTCCCGAGATAATTCGCGCTTTCTCCGAGACTACGCCGCCACCCAGATCAACGCCTTCCTCTGGATCTCCCTCATCGCTGTCACCCTTCTTCTGCTCAGGAAACTCTTCAAGCTCTTTGCTTTGTGGGCTAAAGGGAGCAGGATATCCGGCCTTCCCTGCCCTTCTTTCTACGGCCACTCCAAGCTTATTTCCGAAACTAATCTCACTGGCCTTTTATCGGAGTCGCACAACAAATATGGATCAGTTGTGAAGCTGTGGTTAGGTCCTACCCAGCTTCTAGTGTCAATAAAGGATCCTGTGCTTATTAAAGAGATGCTCTTAAAGGCAGAGGATAAATTGCCTCTGACAGGGAGGGCTTTCCAATTAGCCTTTGGACCATCGAGTCTCTTTTCTTCCTCTTTTGACAAGGTACAAAAGAGAAGGGAATTGTTGGCTGCAGAATTAAATGGGTACTTGCTCCAGAGAGCAAATGTGATTTCTACAAAAGTTGTAGACCACGTCATGGAAAAATTACATGCTATAATGGGCAAAGGCACCCTTGATTGTAAAATTGTTTCTCAGCATATGGCTTTTTCCATCATGGGTGCCACACTTTTCGGAGATGCATTCTTAGCCTGGTCCAAGGCAAGTGTTTACGAAGAGCTTCTCATGATGATTGCTAAAGATGCTTGCTTTTGGGCCTCGTATGGTGTTACTCCCTTCTGGAAACAGGGATTTTGGAGGTATCAGCGGTTGTGCATGAAGTTGAAGAGCTTAACTCAAGATGGTATCGAACAATGCAGACAAAATTACAAGCTTTTTAGTCATATGGATAAAAACTCCAATAGTGAAATCTCAAATCCAGAAACAAAGAATGCACCAGAGGCACCATTTTCTTCTGGCATTTTGATGCCTGATAACTTATCATCGCAAGAGTGTAATGGCCACGTTAATGCAAGAGAAGAGCCTTGTGGAAATATTATGCGTGTAATGTTTCATGGGTGTCTTACTACAGCAGGGTTGATTGGTAACATCTTAGCTAGGCTTGCAACACATCCAGAAATACAGGATAAGATTTACTCAGAGATAATCATGTCTCGGAAAGGGGCACAGAAGCAAAAACAACAAAATGTTGATAAGATGCTTGTTTTGTTGGCCACTGTATATGAATCTGCCCGCCTTATGCCGGCTGGACCTTTGTTACAAAGATGCTCTCTAAAACATGACTTAAATCTGAAAACTGGCTTAACCATACCAGCTGGAGCAATACTTGTTGTTCCTGTACAGTTGGTACAGATGGATGATTCTTGTTGGGGGAATGACGCTAGGCAGTTTAATCCATATCGATTTTTGTCTAAAGCTGTGAAGGGACCTGAATTAGCGCACATCTCGTCTTTAGCAGGGACTGTAGAAGATCTTGTGGATCCAGATCAGGACTCATGCATTTTGGATGACCCAAATCACAATGCTGCCTTTCTTCCCTTTGGTTCTGGGACACGAGCATGTGTTGGCCAGAAATTTGTAATTCTTGGAGTTGCCGCCTTATTTGCATCTTTGCTTGAACACTACGAGATAAGGCTTCAGCCAGGATCTGAGGATGACCCCAAGCCAACGTTGAATGACAGTGTTCTTCAGCTCCTTCCTAGTCCAAAGATAGTATTTATGAAGAGGAACAGCCGAGAATAA 1716 0.4411 MSSCQSPGTPLPSPSCHSRDNSRFLRDYAATQINAFLWISLIAVTLLLLRKLFKLFALWAKGSRISGLPCPSFYGHSKLISETNLTGLLSESHNKYGSVVKLWLGPTQLLVSIKDPVLIKEMLLKAEDKLPLTGRAFQLAFGPSSLFSSSFDKVQKRRELLAAELNGYLLQRANVISTKVVDHVMEKLHAIMGKGTLDCKIVSQHMAFSIMGATLFGDAFLAWSKASVYEELLMMIAKDACFWASYGVTPFWKQGFWRYQRLCMKLKSLTQDGIEQCRQNYKLFSHMDKNSNSEISNPETKNAPEAPFSSGILMPDNLSSQECNGHVNAREEPCGNIMRVMFHGCLTTAGLIGNILARLATHPEIQDKIYSEIIMSRKGAQKQKQQNVDKMLVLLATVYESARLMPAGPLLQRCSLKHDLNLKTGLTIPAGAILVVPVQLVQMDDSCWGNDARQFNPYRFLSKAVKGPELAHISSLAGTVEDLVDPDQDSCILDDPNHNAAFLPFGSGTRACVGQKFVILGVAALFASLLEHYEIRLQPGSEDDPKPTLNDSVLQLLPSPKIVFMKRNSRE* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1136 571 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 505 514 IPR017972 GO:0005506|GO:0016705
Vvi13g1136 571 SUPERFAMILY Cytochrome P450 65 567 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 Gene3D Cytochrome P450 64 567 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 PANTHER CYTOCHROME P450 FAMILY 4 50 542 - -
Vvi13g1136 571 FunFam Cytochrome P450 CYP727A4 63 564 - -
Vvi13g1136 571 PRINTS E-class P450 group I signature 93 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 PRINTS E-class P450 group I signature 502 512 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 PRINTS E-class P450 group I signature 512 535 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 PRINTS E-class P450 group I signature 352 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 Pfam Cytochrome P450 73 555 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 CDD cytochrome_P450 97 549 - -
Vvi13g1136 571 PRINTS P450 superfamily signature 361 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 PRINTS P450 superfamily signature 512 523 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 PRINTS P450 superfamily signature 396 407 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g1136 571 PRINTS P450 superfamily signature 503 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1136 Vvi-Chr13 18585556 18603683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1136 76 545 Cytochrome P450 AT2G26710 23.542 7.50e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1136 - - vvi:100257479 1140.56