Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1135 ATGGCTGAGCAAATTCCATTTAGTATTGCAGAAAGCCTTTTAACAAAGCTGGGTTCCATTGCTCTTCAAGAAATCGGATTGGTGCATGGGGTCCATAAGGAGCTGAGGAAGCTTGAGAATACACTTTACACCATCAAAGCTGTACTCGTCGATGCTGAGAAGCAGCAGCAGGAGGAGAAGAGCCGAGCAGTAGAAAGTTGGGTGAGGAGGCTCAAAGATGTCGTCTATGATGCCGATGACTTGCTGGATGATTTTGCAGTCCAACACCTGCGACCAAAGAATGATATGCAAAGAGGAATTGCCAGACAAGTAAGCCGTCTCTTCACCTCTAAAAGTCAACTTGCGTTTCGCCTTAAGATGGGTCATAGAATTAAGGATATTAGACTACGGTTTGATGAAATTGCTAATGATATTTCCAAGTTTAATTTCCTTCCCAGACCCATAATAGATGTGGGTGTGGAGAATAGGGGGAGAGAGACTCATTCTTTTGTGTTGACGTCTGAAATTATTGGAAGAGATGAAAACAAAGAAGATCTTGTGGAGTTGTTGATGCCATCTGGTAATGAAGAAAATCTTTCCATTGTCGCCATTGTTGGCATGGGGGGTTTAGGCAAGACTACCCTGGCCCAATTGGTATACAATGATGAGAGGGTGCTGAAATATTTCGAGATTAGGATATGGGTTTGTGTTTCTGATGATTTTGATACAAAAACGCTGGTTAAAAAAATTTTGAAGTCTACAACCAATGAAGTTGTGGGAGATTTGGAGTTGGATATTCTGAAAAATCAGCTTCATGAAAAATTAAATCAGAAGAGGTACTTATTGGTACTGGATGACGTTTGGAATGACAACTTTGAAAGCTGGGATCAATTGAGAATTCTGCTGACTGTTGGTGCTAAAGGAAGTAAAATTCTGGTGACTACTCGAAGCGCAAAAGTTGCGTCGGCTATGAAAATCGATTCTCCGTATGTTTTAGAAGGTTTGAGAGAAGATCAATCTTGGGATTTGTTTGAAAAACTGACTTTTAGGGGGCAGGAAAAAGTGTGTCAAAGCCTAGTAACAATAGGAAAAGAAATTATAAAGATGTGTAAGGGAGTGCCACTGGTGATAAGAAGTTTAGGAAGCACACTGCAATTCAAGGCCGAAAAAAGCCATTGGTTGTCCATTAGGAATAATGAAAATTTGATGTCGCTTGATGTTGGAGATAACATCTTACGGGTTTTGAAGCTGAGCTATGATAATTTGCCGGTTCATCTGAGACAATGCTTTGCATATTGTGGGCTGTTTCCTAAAGATCATAAAATTGAGAGAAGAGTATTGGTCCAGATATGGATAGCACAGGGTTATATTCATACCTCGGATGAAAGACATCATTTGGAAGATATCGGTGATCAATACTTTGAGGAACTGTTGTCGAAGTCCTTCTTTCAAGAGGTAGAAAAAGACAGTTATGGCAATATATTAAGCTGCAAAATGCATGATCTTATCCATGATCTCGCACAATCGGTGGCAGGATCTGAGTGCTCCTTTTTAAAAAATGATATGGGAAATGCAATAGGGAGGGTTTTGGAAAGAGCCCGTCATGTGTCGCTGGTGGAAGCTTTGAATTCATTACAGGAGGTTCTAAAGACAAAGCACTTAAGAACCATTTTTGTGTTCTCTCATCAAGAGTTTCCATGTGATTTAGCATGTAGGTCGTTACGTGTGTTGGATCTAAGTCGACTGGGGATTGAGAAGGTGCCGATATCTGTTGGCAAATTGAATCATCTGAGGTATCTTGACCTTTCCTATAATGAGTTTGATGTGCTCCCCAATTCTGTTACAAGTTTCCACCATTTGCAGACACTGAAACTTTTTAAGTGTGAAGAACTTAAAGCATTGCCAAGAGACATGAGGAAATTGATCAATCTAAGACATCTTGAGATAGATGGATGCAGTAGTTTGACTCATATGCCTTCTGGCTTGGGAGAATTGAGTATGCTTCAACATCTACCATTATTTGTTCTTGGGAATGACAAAGTAGACTCCAGATATGATGAAACTGCTGGGCTAACTGAATTGAAATCCCTTGACCATCTGCGAGGAGAGCTTTGTATCCAATCTCTTGAGAATGTGAGGGCGGTTGCATTAGAATCCACTGAAGCAATTTTGAAGGGAAAGCAGTACCTTCAGTCCTTGAGATTAAATTGGTGGGATCTAGAAGCTAACAGGAGTCAGGATGCTGAGTTGGTGATGGAAGGCCTCCAACCGCACCCAAATCTCAAGGAGCTCTACATATATGGTTATGGAGGTGTGAGGTTCCCTAGTTGGATGATGAACAATGATCTGGGTTTGTCGCTTCAAAACCTAGCTCGTATTGAGATACGAAGATGTGACAGATGCCAAGATTTGCCACCTTTTGGTCAACTCCCTTCTCTTGAGCTTCTGAAGCTTCAGGATTTAACTGCGGTAGTGTACATAAATGAGTCTTCATCAGCAACTGATCCATTTTTCCCATCTCTCAAAAGACTCGAACTCTATGAGTTGCCTAATTTGAAGGGATGGTGGAGGAGGGATGGAACAGAAGAGCAAGTTCTGTCAGTACCTTCATTTCCTTGTCTCTCTGAATTTCTTATTATGGGTTGCCATAACTTAACATCCTTGCAACTGCCTCCATCTCCTTGTTTTTCTCAGTTAGAGCTCGAGCATTGCATGAACCTGAAAACCTTGATACTTCCCCCATTTCCTTGCCTTTCTAAGTTAGATATCAGTGACTGCCCTGAGTTGAGATCCTTTCTATTGCCTTCATCTCCATGCCTTTCTAAATTAGATATCAGTGAATGCCTTAACTTGACATCACTTGAGCTGCATTCGTGTCCTCGTCTTTCTGAATTACATATCTGTGGTTGTCCTAATTTGACATCCTTGCAACTACCGTCATTTCCTAGTCTTGAGGAACTAAACCTGGATAATGTTAGTCAGGAGCTACTGCTGCAGTTAATGTTTGTCTCTTCTTCATTGAAATCTGTGTCTATTTCAAGAATAGATGATCTTATATCTCTATCATCAGAAGGGCTGCGATGCCTCACTTCTCTCAGCAATTTGTTAATTAATGACTGTCATAGTCTGATGCATCTGTCTCAAGGGATTCAACATCTCACTACTCTTAAGGGGCTACGGATTCTGCAATGCAGAGAGCTTGATTTGTCAGATAAAGAGGATGATGACGATACGCCATTCCAAGGACTTAGAAGCTTGCATCACCTGCATATCCAATATATTCCAAAGTTGGTCTCTCTTCCAAAAGGGCTTCTACAAGTCACCTCGCTCCAAAGCCTAACAATTGGCGACTGTTCTGGTTTGGCAACTTTACCAGACTGGATTGGTAGCCTTACGTCACTTAAAGAGCTTCAAATTTCCGATTGCCCCAAGCTGAAATCACTGCCAGAAGAGATCCGCTGCCTTAGCACTCTACAGACACTCAGAATCTCCTTGTGCAGACACTTGTTGGAAAGATGCCAAATGGAAATAGGAGAAGACTGGCCCAAGATTTCTCATGTCCCAGAAATTTACATCAATGGTCAGCGACAGATTGCTGGTTATATGGACTCCTGCTCTTCTCTCTCATTCAAGTCCACCATCCGCCATACATTTTAG 3636 0.4145 MAEQIPFSIAESLLTKLGSIALQEIGLVHGVHKELRKLENTLYTIKAVLVDAEKQQQEEKSRAVESWVRRLKDVVYDADDLLDDFAVQHLRPKNDMQRGIARQVSRLFTSKSQLAFRLKMGHRIKDIRLRFDEIANDISKFNFLPRPIIDVGVENRGRETHSFVLTSEIIGRDENKEDLVELLMPSGNEENLSIVAIVGMGGLGKTTLAQLVYNDERVLKYFEIRIWVCVSDDFDTKTLVKKILKSTTNEVVGDLELDILKNQLHEKLNQKRYLLVLDDVWNDNFESWDQLRILLTVGAKGSKILVTTRSAKVASAMKIDSPYVLEGLREDQSWDLFEKLTFRGQEKVCQSLVTIGKEIIKMCKGVPLVIRSLGSTLQFKAEKSHWLSIRNNENLMSLDVGDNILRVLKLSYDNLPVHLRQCFAYCGLFPKDHKIERRVLVQIWIAQGYIHTSDERHHLEDIGDQYFEELLSKSFFQEVEKDSYGNILSCKMHDLIHDLAQSVAGSECSFLKNDMGNAIGRVLERARHVSLVEALNSLQEVLKTKHLRTIFVFSHQEFPCDLACRSLRVLDLSRLGIEKVPISVGKLNHLRYLDLSYNEFDVLPNSVTSFHHLQTLKLFKCEELKALPRDMRKLINLRHLEIDGCSSLTHMPSGLGELSMLQHLPLFVLGNDKVDSRYDETAGLTELKSLDHLRGELCIQSLENVRAVALESTEAILKGKQYLQSLRLNWWDLEANRSQDAELVMEGLQPHPNLKELYIYGYGGVRFPSWMMNNDLGLSLQNLARIEIRRCDRCQDLPPFGQLPSLELLKLQDLTAVVYINESSSATDPFFPSLKRLELYELPNLKGWWRRDGTEEQVLSVPSFPCLSEFLIMGCHNLTSLQLPPSPCFSQLELEHCMNLKTLILPPFPCLSKLDISDCPELRSFLLPSSPCLSKLDISECLNLTSLELHSCPRLSELHICGCPNLTSLQLPSFPSLEELNLDNVSQELLLQLMFVSSSLKSVSISRIDDLISLSSEGLRCLTSLSNLLINDCHSLMHLSQGIQHLTTLKGLRILQCRELDLSDKEDDDDTPFQGLRSLHHLHIQYIPKLVSLPKGLLQVTSLQSLTIGDCSGLATLPDWIGSLTSLKELQISDCPKLKSLPEEIRCLSTLQTLRISLCRHLLERCQMEIGEDWPKISHVPEIYINGQRQIAGYMDSCSSLSFKSTIRHTF* 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1135 1211 Gene3D Ribonuclease Inhibitor 973 1062 IPR032675 -
Vvi13g1135 1211 Gene3D Ribonuclease Inhibitor 1063 1172 IPR032675 -
Vvi13g1135 1211 Gene3D Ribonuclease Inhibitor 523 676 IPR032675 -
Vvi13g1135 1211 Gene3D Ribonuclease Inhibitor 887 972 IPR032675 -
Vvi13g1135 1211 Gene3D Ribonuclease Inhibitor 679 886 IPR032675 -
Vvi13g1135 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 426 IPR027417 -
Vvi13g1135 1211 Pfam NB-ARC domain 173 414 IPR002182 GO:0043531
Vvi13g1135 1211 FunFam Probable disease resistance protein At1g63360 412 502 - -
Vvi13g1135 1211 PRINTS Disease resistance protein signature 194 209 - -
Vvi13g1135 1211 PRINTS Disease resistance protein signature 363 377 - -
Vvi13g1135 1211 PRINTS Disease resistance protein signature 267 281 - -
Vvi13g1135 1211 PRINTS Disease resistance protein signature 632 648 - -
Vvi13g1135 1211 Gene3D - 10 125 - -
Vvi13g1135 1211 SUPERFAMILY L domain-like 476 923 - -
Vvi13g1135 1211 FunFam Probable disease resistance protein At1g61300 152 322 - -
Vvi13g1135 1211 Gene3D - 412 503 IPR036388 -
Vvi13g1135 1211 SUPERFAMILY L domain-like 491 1166 - -
Vvi13g1135 1211 Coils Coil 35 55 - -
Vvi13g1135 1211 Gene3D - 157 323 IPR027417 -
Vvi13g1135 1211 Pfam Leucine rich repeat 565 619 IPR001611 GO:0005515
Vvi13g1135 1211 PANTHER DISEASE RESISTANCE PROTEIN RP 35 926 IPR044974 GO:0006952
Vvi13g1135 1211 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vvi13g1135 1211 Gene3D - 327 411 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1135 Vvi-Chr13 18564206 18567841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1135 188 908 WRKY Transcription Factor Family AT5G45050 22.710 4.36e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1135 - - vvi:100247224 2382.06