Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1133 ATGAGGAAGAAGCTCGATACCCGTTTCCCGGCTGCTCGGATTAAAAAGATAATGCAAGCTGATGAAGATGTTGGGAAGATTGCCCTGGCAGTGCCTGTTTTAGTTTCTAAAGCATTGGAATTATTTTTGCAAGACCTTTGTGACCGTACCTATGATATAACCCTTCAGAGAGGAGCAAAGACTATGAGTTCATTGCATTTGAAACATTGTGTCCAAAGGCACAATGTATTTGATTTTCTGAGGGACATTGTGAGCAAGGTTCCAGACTATGGTCATGCTGATGCTGCTGGTGATGATCGAACCATGTCAAAAAGAAGGAAAGCTGCAGGGGATGAATTCAATGAAAGCGATGAAGAGACTAAAAGGAGCAGGATGCATGAGATGAGTCCTGTCAGCAGCAGTGGCAGAGGGAGAGGCAGGGGACGTGGAAGAGGCCGTGGTCGGGGCAGTCGAGCAATAGAGAGAGAGCCTGTTCCACATGATGTAGAATCTGACCCCTGCACATCTTTGCCACACAGCAGTAAACATGACCCCAACTTGGGAAGGCCAATACCCAACATTTCTGAGTCAAAGGAATTAGTGAAGGATAATACTGCAGTGAGTGATGGTGCAAATCCGGTGGTTCGAAACTTTGATCTGAATGCTAATGTAGATGAAGATGTTACAGCCACAGTAGCCACCAAAGCAACAGCAGCACCAGCAGTACTAGCACCAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGCAGCACCAGCACCAGCACCAGCAGCAGCAGTACCAGCACCAGCACCAGCACCAGCAGCAGTGGATGTCCGTGACTCATCGGCAGAGACTGCCACTGAGGCTAAACATGAAGAGTATCCTGGCTGGTCACTTTCTGAAATGGACAGAATGGCAATTGATCCAGTCCAGCTTGCACAACTCAATTCTAGGATAGACGAGGAGGAAGATTATGATGAGGAAGGGTGA 981 0.4852 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKHCVQRHNVFDFLRDIVSKVPDYGHADAAGDDRTMSKRRKAAGDEFNESDEETKRSRMHEMSPVSSSGRGRGRGRGRGRGRGSRAIEREPVPHDVESDPCTSLPHSSKHDPNLGRPIPNISESKELVKDNTAVSDGANPVVRNFDLNANVDEDVTATVATKATAAPAVLAPAPAAAAAAAAAAPAAAPAPAPAAAVPAPAPAPAAVDVRDSSAETATEAKHEEYPGWSLSEMDRMAIDPVQLAQLNSRIDEEEDYDEEG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1133 326 MobiDBLite consensus disorder prediction 90 188 - -
Vvi13g1133 326 MobiDBLite consensus disorder prediction 280 295 - -
Vvi13g1133 326 FunFam dr1-associated corepressor homolog 1 86 - -
Vvi13g1133 326 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 114 - -
Vvi13g1133 326 MobiDBLite consensus disorder prediction 90 126 - -
Vvi13g1133 326 MobiDBLite consensus disorder prediction 147 162 - -
Vvi13g1133 326 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vvi13g1133 326 MobiDBLite consensus disorder prediction 247 299 - -
Vvi13g1133 326 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vvi13g1133 326 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1133 Vvi-Chr13 18534663 18549282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1133 1 134 CCAAT-HAP5 Transcription Factor Family AT3G12480 74.286 3.14e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi13g1133 CBFD_NFYB_HMF 1.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1133 K21752 - vvi:100255768 520.39