Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1132 ATGTCATCTTTTCCATTCTCTTATTCAAATCTAAGACTTCTCTGGTCCATGGAGGCACTTGGAGTAGATCATCAATGTCCCTCAGAGGGCTCTAGCATCTCTGCCACATCAGAGGGAACTCCATCCAAAGATGGGGAAAGGGCAAAGAAGGTGAAGATGAAAGGAGAAGTTAGTGAAGAAAAGAGGAAAACCGAATCGGGTTCGAGCCTTTTGCTTGATCTAAGGCTCTCCAATGATGATTCCAAGCTGGACCTCAACCTCTGCAACTCTCTCAGAGCGGCTTCTTCACCGGAGAGGACAGTGATGGTACGCGAAAAACAACCAGAGAGGAGGGTTTTCTCCTGCAACTTCTGCAAAAGAGAGTTCTCCACTTCACAAGCATTGGGTGGACATCAAAACGCTCATAAACAAGAGCGGGCAATAGCGAAAAGGCGACAAGGGATGGATATGCCAGGCTTTGGACATCCACACTTTCACTATAATTATCCCTATTCAAGCATCCCACCAGTCCCATTATATGGCTCTTTCAATAGGTCACTTGGGGTGAGGATGGACTCTATGATTCATAAGCCTCCGTACCCATGGACACCACAGCCGCCCCCGCCCCCGCCTGGATACCGATTTGGCCATGGCGGGTGGCTGAGGCCTAACATGATGAGCCCACAATCAGCTTTTGAACATAGAATAATGAGAAAGGAGGATTTTCATATGCATGGTGGTGGTGTATTTGGAGCTTCTACAGGACCTTCCTCTAGGTTTGAGGAAAGTGATGGTGCAATTTCAAGCCTTGGAGTTTCCAATTCAAATGGTGATGACCCCAGTATTGTGGCCGACAAGGCAAGTGGAGGTGATGATCTTTGGCAAGGGGGCCATAAGGACAGTGATCAACCAGGAGGGCCAAATCTGGATTTATCTCTCAAGCTTTGA 927 0.479 MSSFPFSYSNLRLLWSMEALGVDHQCPSEGSSISATSEGTPSKDGERAKKVKMKGEVSEEKRKTESGSSLLLDLRLSNDDSKLDLNLCNSLRAASSPERTVMVREKQPERRVFSCNFCKREFSTSQALGGHQNAHKQERAIAKRRQGMDMPGFGHPHFHYNYPYSSIPPVPLYGSFNRSLGVRMDSMIHKPPYPWTPQPPPPPPGYRFGHGGWLRPNMMSPQSAFEHRIMRKEDFHMHGGGVFGASTGPSSRFEESDGAISSLGVSNSNGDDPSIVADKASGGDDLWQGGHKDSDQPGGPNLDLSLKL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1132 308 MobiDBLite consensus disorder prediction 42 65 - -
Vvi13g1132 308 Pfam C2H2-type zinc finger 112 137 - -
Vvi13g1132 308 SUPERFAMILY beta-beta-alpha zinc fingers 110 140 IPR036236 -
Vvi13g1132 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Vvi13g1132 308 MobiDBLite consensus disorder prediction 27 41 - -
Vvi13g1132 308 MobiDBLite consensus disorder prediction 240 308 - -
Vvi13g1132 308 Gene3D Classic Zinc Finger 93 150 - -
Vvi13g1132 308 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 22 308 IPR044246 GO:0009788
Vvi13g1132 308 MobiDBLite consensus disorder prediction 27 65 - -
Vvi13g1132 308 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Vvi13g1132 308 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1132 Vvi-Chr13 18524495 18525421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1132 72 191 C2H2 Transcription Factor Family AT5G10970 42.969 1.30e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi13g1132 zf-C2H2_6 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1132 - - vvi:104881271 547.74