Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1131 ATGGCTAAGCTTCATTTCCAGAGTTTGCTTTGTTTGATGCAAAAACGTTTCCTCACAACATCGTCAACACTGTATACATCTTCGTTGTCTTCTTCATCTTCAACATTATTATCACCATCGTACACAGCCCAATTTCTTGTGAAATCTTGTGGGCTTCCCTTGGACTCTGCCATTTCCATCTCTCAGAAGCTCAACCTCGATGAAAACAAACGGCAAAAGCATGAGTCTGTGCTCGAATTCCTCAAATCTCATGGATTCTCCGATACCCATGTTGCAAAACTTGTCTCAAAGTGTCCCCCGATCCTCCAAGCCAGAGTAGATATGCTCAAGCTCAAAATAGACTACCTCCATGACAGTGGCTTTGTGGGTCCGGTCCTTCATGAGCTAATTGTGTCTAATCCGGCCATTTTGAGGCGAAGCTTGGATAAACAGATAAAACCGTCATTTGATTTTCTCAAGGAATTCCTTGAAACCAATGAGAAAATTGCAGCAGCTATTAAGCGCGAATCATGGTTGTTAACCTTCGATCTGAAGAAAATTTTGAAGCCAAACACTTTTCTTTTGATAAATGAAGGGGTCCCTCATAGTAGAATGTCAAAATTGATTACATTACAGCCGAGAGTCATAATGCAGCATGTTGATAGGATGGTGTATGCCACAGAAAGGGCCAGAAGTTTGGGTATCAAACCAACCGATCCTATATATGTAACTGCTATTACAGTGATTCTCTCAATGACCGAATCAACCTGGAAAAGGAAAGTGGAACTGTATGAGAAATTTGGTTTTACTGAGGTTGAGATTCTCAAAGCTATCAAGCGTCAACCACATTTTATGGCTTGTTCAGAGGAGAAAATCAAGAGTTTAATGAATTTTTATACAAACACAATGAAGTTGAAGCCATCTGCAATAGCTACTTATCCTAGGCTTCTTTTGTATTCATTTGATGCAAGGATACGACCGAGGTTTAATGTTTTGAACATCTTGGCTTCAAAGAAGCTGCTTAAGAAACACAAAAAGATTGCATGGTTGCTCACACAAAGCGAGGCTAGTTTCTTGAACAATTATGTGATCAAGTACGTGGACCAAGTTCCAGATTTAATGGAGCTATATCGTGGGGTCAAGAAGATTGATCTCTGA 1137 0.4011 MAKLHFQSLLCLMQKRFLTTSSTLYTSSLSSSSSTLLSPSYTAQFLVKSCGLPLDSAISISQKLNLDENKRQKHESVLEFLKSHGFSDTHVAKLVSKCPPILQARVDMLKLKIDYLHDSGFVGPVLHELIVSNPAILRRSLDKQIKPSFDFLKEFLETNEKIAAAIKRESWLLTFDLKKILKPNTFLLINEGVPHSRMSKLITLQPRVIMQHVDRMVYATERARSLGIKPTDPIYVTAITVILSMTESTWKRKVELYEKFGFTEVEILKAIKRQPHFMACSEEKIKSLMNFYTNTMKLKPSAIATYPRLLLYSFDARIRPRFNVLNILASKKLLKKHKKIAWLLTQSEASFLNNYVIKYVDQVPDLMELYRGVKKIDL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1131 378 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 SMART mt_12 163 194 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 SMART mt_12 92 122 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 PANTHER CGI-12 PROTEIN-RELATED 43 359 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 FunFam Mitochondrial transcription termination factor-like 142 363 - -
Vvi13g1131 378 Gene3D Transcription termination factor 3, mitochondrial 149 363 IPR038538 -
Vvi13g1131 378 Pfam mTERF 112 216 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 Pfam mTERF 151 352 IPR003690 GO:0003690|GO:0006355
Vvi13g1131 378 Pfam mTERF 45 147 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1131 Vvi-Chr13 18508385 18509521 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi13g1131 mTERF 2.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1131 K15032 - vvi:100259193 707.212