Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1124 ATGGCCTCTAACCGACCACTTTTGATCCCATCTCCTCGAACCCCAGCTGTTGAAGATCTTCCAACCATACCCATCTTCGCTGATCTAGCAAAACCCAATTCTGAAAACCCCAAATTGGTTATGCGTATGGATTCCAATAACCCACTTGGGAATCACACAAATACTGAACCCACCTTGAATTCATCTTCTCGGCGAAGTATCTCGTCGGTTCAGTCGAGGGCCTCCCGTGGGAATTCTGTCAGTGGGAAATCTGTTAGTGGGGTGAGTTTTGATCTTTCTGGATCCAGGCCAGTGCGACATGGGTCGAGGGGCGCTGAATCTGATGGATTTAGCATGTCCCAGAGGGAGCTTAGTGATGAGGATGCAAGGTTGATCTATATTAATGATCCAGAAAAGAGTAATGAAAGATATGAGTTCGCAGGGAACACTGTTAGGACTGGGAAGTATTCTATTCTCACTTTTTTGCCTCGGAACTTGTTTGAACAATTTCATAGGATTGCATACATATATTTCCTCGTGATTGCGATCCTTAATCAGCTCCCTCAGCTGGCCGTTTTTGGCCGGACAGCTTCCGTACTGCCTTTAGCCATTGTTTTGTTAGTTACTGCCATTAAGGATGCATACGAGGACTGGAGGAGGCACCGGTCAGACCAAATTGAGAACAATAGGATGGCACGGGTGCTTGGGGATGATGGGTTTCAAGAGAAAAAATGGAAGAACATCCGCGTTGGTGAAATCATCAAAATCTCAGCTAATGATACTCTTCCTTGTGACATAGTGCTGCTCTCTACCAGTGATCCTACTGGGGTTGCTTATGTGCAGACCATTAATTTGGATGGGGAGTCAAACTTGAAGACCCGGTATGCTAGGCAGGAGACCATTTCGAGAATGTCCCAGAAGGAGAGGATGAGTGGGTTGATCAAGTGTGAGAAGCCTAGCAGGAACATATATGGGTTTCAGGGAAACATGGAGGTTGATGGGAAACGCTTGTCGCTTGGACCATCCAATATTGTACTTCGAGGTTGTGAGCTTAAGAATACTACATGGGCAATTGGGGTTGCTGTGTATTGTGGTCGTGAGACGAAAGCAATGCTCAATAACTCTGGTGCTCCATCAAAGAGGAGCCGACTTGAGACCCACATGAATCGGGAGACCCTTTTTCTCTCTGCATTTCTTATTTCTTTGTGTACAATAGTCTCTGTTCTTGCAGCTGTTTGGTTGAGGCGACACAGAGATGAGTTAGATTACTTGCCGTATTACAGGAGAAAAAGTTATGCTAAGGGAAAGCCAGAAAATTATAACTATTATGGTTGGGGTTGGGAGATAGTATTCACATTTCTCATGTCAGTTATTGTGTTCCAGATCATGATTCCCATTTCTTTGTACATCTCTATGGAGCTTGTCCGGGTTGGTCAGGCATACTTCATGATCCAAGATAATAAATTGTATGATGAGGCCTCAAATTCAAGGTTCCAGTGCAGGGCTTTGAATATAAATGAAGATCTAGGACAAATCAAATATGTATTCTCAGATAAAACTGGTACACTGACGGAGAACAAGATGGAATTTCAATGTGCAAGCATTTGGGGAGTAGATTACAGAGGTGGGACAACCTGCATGCAAGGAGATGGATATTCTGTTCAAGTTGATGGGCAGGTCTGGAGGCCAAAGATGAAGGTGAAAGTTGACCTGGAGCTTGAACGACTATCAAAAAGTGGAAAGCAGACAGAAGAAGGCAAACACATCCATGATTTTTTTCTTGCATTGGCAGCTTGCAATACAATTGTGCCTATTGTAGTAGACACATCTGATCCTGCTGTGAGGTTGATAGATTATCAAGGGGAATCTCCAGATGAACAGGCATTGGTTTATGCTGCTGCTGCTTATGGTTTTATGCTCATGGAACGAACCTCTGGCCATATAGTTATTGATGTTCATGGAGAAAGACAAAGGTTTGATGTTTTGGGTTTGCATGAGTTTGATAGTGACCGTAAAAGGATGTCAGTTATATTGGGGTGCCCTGACAACACTGTGAAAGTTTTTGTAAAAGGTGCTGACACATCCATGTTTAGCATAATTGATAAATTTTCAAACATGAACATTATACGTGCAACTGAAAGTCATCTTCATAATTTCTCCTCTCTGGGTCTGAGAACACTTGTTGTTGGGATGCGGGATCTCAATGGTTCTGAATTTGAGCAATGGAAGTTTGCCTTTGAGACAGCAAGCACTGCTTTGATTGGAAGGGCAGCTTTACTTCGCAAGATTGCTAGCAATATAGAAAATAATCTCAGCATATTGGGTGCCTCTGGAATCGAAGATAAATTGCAGCAGGGTGTGCCGGAAGCAATAGAGTCTTTGAGAATGGCAGGGATTAAAGTGTGGGTTTTGACTGGAGACAAGCAAGAAACTGCCATATCAATTGGCTACTCATCAAAACTCTTAACAAGCAATATGACCCGGATTATAATCAATAACAACTCTAAGGAGTCTTGTAAAAAGAGTTTAGAAGATGCTATTGTTACATCTAAGACACTCATGACACAGTCTGGTATTTCACAAAATACTGAAGGGATTTCTGGAACTGCTGAGACTCCAGTTGCCTTGATTATTGATGGTACCAGCCTTGTTTATGTTCTTGACGGTGAACTTGAAGAACAGCTCTTTCAGTTGGCTAGTGGATGTTCTGTGGTACTGTGTTGCCGAGTAGCTCCACTGCAAAAAGCTGGAATTGTTGCCCTCATAAAGAAAAGGACTGATGATATGACCCTTGCCATTGGGGATGGTGCTAATGATGTTTCAATGATACAAATGGCTGATGTGGGAATTGGTATCAGTGGCCAAGAGGGCCGTCAAGCTGTCATGGCATCAGATTTTGCAATGGGGCAGTTCAGATTTTTGGTTCCACTTTTATTAGTTCATGGTCATTGGAATTACCAGCGGATGGGCTACATGATACTGTACAATTTTTACAGGAATGCTGTGTTTGTTCTTGTCTTGTTCTGGTACGTGCTATATACTTGCTTCAGTGTGACAACTGCGATTAATGAATGGAGCAGTGTGTTGTATTCTGTAATCTACAGCTCTGTGCCTACAATTGTTGTTGCAATTCTTGACAAGGACCTAAGTAGTAGGACTCTTCTAAAGCATCCTCAGCTCTATGGATCTGGGCACAGGCAAGAGTGTTACAACTCAAAATTATTTTGGTTAACAATGCTGGACACTGTGTGGCAGAGTGGTGTCATCTTCTTTGTACCTCTATTTGCATATTGGAGTAGCGTTGTTGATGGGTCAAGCATTGGAGATCTCTGGACACTTGCAGTGGTGATTTTGGTCAACATACACTTGGCCATGGATGTTATTCGGTGGACTTGGATTGTTCATGCAGCCATTTGGGGATCTATAGTTGCAACTTGCATTTGCGTCATTATCATTGATGCTATACCTTCATTACGTGGTTACTGGGCCATTTTCCATATAGCAAAGACGGGTTCATTCTGGCTGTGCTTGCTTGATTGCAAGAGAAGCTGA 3531 0.4296 MASNRPLLIPSPRTPAVEDLPTIPIFADLAKPNSENPKLVMRMDSNNPLGNHTNTEPTLNSSSRRSISSVQSRASRGNSVSGKSVSGVSFDLSGSRPVRHGSRGAESDGFSMSQRELSDEDARLIYINDPEKSNERYEFAGNTVRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAILNQLPQLAVFGRTASVLPLAIVLLVTAIKDAYEDWRRHRSDQIENNRMARVLGDDGFQEKKWKNIRVGEIIKISANDTLPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYARQETISRMSQKERMSGLIKCEKPSRNIYGFQGNMEVDGKRLSLGPSNIVLRGCELKNTTWAIGVAVYCGRETKAMLNNSGAPSKRSRLETHMNRETLFLSAFLISLCTIVSVLAAVWLRRHRDELDYLPYYRRKSYAKGKPENYNYYGWGWEIVFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIQDNKLYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYRGGTTCMQGDGYSVQVDGQVWRPKMKVKVDLELERLSKSGKQTEEGKHIHDFFLALAACNTIVPIVVDTSDPAVRLIDYQGESPDEQALVYAAAAYGFMLMERTSGHIVIDVHGERQRFDVLGLHEFDSDRKRMSVILGCPDNTVKVFVKGADTSMFSIIDKFSNMNIIRATESHLHNFSSLGLRTLVVGMRDLNGSEFEQWKFAFETASTALIGRAALLRKIASNIENNLSILGASGIEDKLQQGVPEAIESLRMAGIKVWVLTGDKQETAISIGYSSKLLTSNMTRIIINNNSKESCKKSLEDAIVTSKTLMTQSGISQNTEGISGTAETPVALIIDGTSLVYVLDGELEEQLFQLASGCSVVLCCRVAPLQKAGIVALIKKRTDDMTLAIGDGANDVSMIQMADVGIGISGQEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLYTCFSVTTAINEWSSVLYSVIYSSVPTIVVAILDKDLSSRTLLKHPQLYGSGHRQECYNSKLFWLTMLDTVWQSGVIFFVPLFAYWSSVVDGSSIGDLWTLAVVILVNIHLAMDVIRWTWIVHAAIWGSIVATCICVIIIDAIPSLRGYWAIFHIAKTGSFWLCLLDCKRS* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1124 1176 Pfam E1-E2 ATPase 223 467 - -
Vvi13g1124 1176 FunFam Phospholipid-transporting ATPase 197 366 - -
Vvi13g1124 1176 Pfam Cation transport ATPase (P-type) 616 690 - -
Vvi13g1124 1176 Gene3D - 764 966 IPR023214 -
Vvi13g1124 1176 FunFam Phospholipid-transporting ATPase 611 744 - -
Vvi13g1124 1176 NCBIfam phospholipid-translocating P-type ATPase 139 1171 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vvi13g1124 1176 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 117 1171 - -
Vvi13g1124 1176 Pfam Phospholipid-translocating P-type ATPase C-terminal 954 1171 IPR032630 -
Vvi13g1124 1176 SUPERFAMILY HAD-like 496 967 IPR036412 -
Vvi13g1124 1176 Gene3D - 195 366 - -
Vvi13g1124 1176 SUPERFAMILY Calcium ATPase, transduction domain A 222 363 IPR008250 -
Vvi13g1124 1176 Pfam Phospholipid-translocating ATPase N-terminal 125 190 IPR032631 -
Vvi13g1124 1176 SFLD p-type atpase 493 977 IPR044492 -
Vvi13g1124 1176 Gene3D - 606 742 IPR023299 GO:0000166
Vvi13g1124 1176 NCBIfam HAD-IC family P-type ATPase 439 528 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi13g1124 1176 NCBIfam HAD-IC family P-type ATPase 896 1011 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi13g1124 1176 SFLD Haloacid Dehalogenase 493 977 - -
Vvi13g1124 1176 SUPERFAMILY Calcium ATPase, transmembrane domain M 136 1170 IPR023298 -
Vvi13g1124 1176 PRINTS Sodium/potassium-transporting ATPase signature 1003 1023 - -
Vvi13g1124 1176 PRINTS Sodium/potassium-transporting ATPase signature 502 523 - -
Vvi13g1124 1176 MobiDBLite consensus disorder prediction 46 91 - -
Vvi13g1124 1176 CDD P-type_ATPase_APLT_Dnf-like 141 1086 - -
Vvi13g1124 1176 PRINTS P-type cation-transporting ATPase superfamily signature 926 945 - -
Vvi13g1124 1176 PRINTS P-type cation-transporting ATPase superfamily signature 509 523 - -
Vvi13g1124 1176 ProSitePatterns E1-E2 ATPases phosphorylation site. 511 517 IPR018303 -
Vvi13g1124 1176 FunFam Phospholipid-transporting ATPase 763 966 - -
Vvi13g1124 1176 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 515 779 IPR023299 GO:0000166
Vvi13g1124 1176 MobiDBLite consensus disorder prediction 37 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1124 Vvi-Chr13 18282475 18291370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1124 43 1171 Primary Pumps ATPases AT5G04930 70.318 0.0 1677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1124 K14802 - vvi:100254060 2299.63