Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1118 ATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCCCGCAAAACCCGAAGAAGAGTTGCTAGACAGAAGAAAGCTGTGAAGATTTTCCCTCGCCCCACTGTTGGACCACTTCGCCCACTTGTTCATGGACAAACTTTGAAGTACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTGGAAGAGCTCAAGGCAGCAGGCATCCCAAAGAAACTGGCTCCAACCATCGGCATATCGGTTGATCATCGCCGTAAGAACCGTTCTCTAGAGAGCCTTCAAGCAAATGTCCAGAGGTTGAAGACATACAAGGCCAAATTGGTTGTCTTCCCAAGACGTGCTCGCAAATTCAAGGCTGGTGATTCTGCTCCTGAGGAACTAGGAACAGCTACTCAAGTCCAAGGTCAGTACATGCCCGTTGTGCAAGAGAAGCCAGTTGTGGAGCTTGTGAAGGTCACAGATGAAATGAAATCTTTCAAAGCATATGGCAAGCTCCGTGTCGAGCGAATGAATGAACGCCATGTTGGTGTAAGGATGAAGAAGGCTGCAGAGGCTGAGAAGGAAGACAAGAAATAG 624 0.4792 MVKHNNVVPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTVGPLRPLVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKFKAGDSAPEELGTATQVQGQYMPVVQEKPVVELVKVTDEMKSFKAYGKLRVERMNERHVGVRMKKAAEAEKEDKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1118 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Vvi13g1118 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vvi13g1118 207 FunFam 60S ribosomal protein L13 166 207 - -
Vvi13g1118 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vvi13g1118 207 Gene3D - 167 207 - -
Vvi13g1118 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1118 Vvi-Chr13 18211379 18212895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1118 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 83.246 1.56e-122 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1118 K02873 - vvi:100257471 382.489