Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1115 ATGTTACATATAGCGATGGATGTCAAAAGGGTTCAATACAGAACTCCAATAACAGGAGGAGGACGAGGACGAGGATATGGGAAGAAAGGTGCTGTTTGCAAGTATTGGCTTCAAGGGAGGTGCAACAGAAACCCCTGTAAGTTTGTGCATGGGGAAGTGCCAAAGTCTATCAACTATATGTATCAACGGACTATGCATGCCCATCATCAAACATCAAAGCAGCCGTCTCATGGAGGCAGGCCTAATTCTAAGAGGTCATCTGTCGGAACTACAAATAAAGGAGATGGAACCCTGACCAAGAACCCTGACCATGAACCTAAGCAATCATCCTCCTTAACAAGTCAAGAAGATGGAACAGAGGAAAATGGAACTGCAAAGCATTCTCATGGAAATTCTGATCCTGAGCATCAAGATTCGTCTTTCCTAACAAGTAGAGGAGACGCAATTTCCCAGAAAGATACCCAGCAAAGTTTGATACTGGACACCTGCAATGATGGAGATAAGTGCCAATGTTTGAATTCATGGTTCATGGGAGAAGGGGTTTCAATGTTAGCCCAGCTTGAAGGGCATAAGAAGGCTGTTACTGGGATTGCACTTCCATTAGGCTCAGACAAGCTTTACACTGGAAGTGGAGATGGAGTTGCTCGGGTTTGGGACTGCCATACTGGTCAGTTTGTTGATGGGCTCGATCTTGGTAGTGAAATTGGATGTTTAATTAGCGATGACTCATGGATATTTGTTGGAATGAGGAACCTTGTCAAGGTAAGTTGCAAGCATGGTTTATTCCTGTTCTTTTTCACAGTTTAG 807 0.4387 MLHIAMDVKRVQYRTPITGGGRGRGYGKKGAVCKYWLQGRCNRNPCKFVHGEVPKSINYMYQRTMHAHHQTSKQPSHGGRPNSKRSSVGTTNKGDGTLTKNPDHEPKQSSSLTSQEDGTEENGTAKHSHGNSDPEHQDSSFLTSRGDAISQKDTQQSLILDTCNDGDKCQCLNSWFMGEGVSMLAQLEGHKKAVTGIALPLGSDKLYTGSGDGVARVWDCHTGQFVDGLDLGSEIGCLISDDSWIFVGMRNLVKVSCKHGLFLFFFTV* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1115 268 MobiDBLite consensus disorder prediction 120 134 - -
Vvi13g1115 268 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 219 - -
Vvi13g1115 268 SUPERFAMILY WD40 repeat-like 179 250 IPR036322 GO:0005515
Vvi13g1115 268 SMART WD40_4 180 219 IPR001680 GO:0005515
Vvi13g1115 268 MobiDBLite consensus disorder prediction 66 142 - -
Vvi13g1115 268 SMART c3hfinal6 28 52 IPR000571 GO:0046872
Vvi13g1115 268 ProSiteProfiles Zinc finger C3H1-type profile. 27 53 IPR000571 GO:0046872
Vvi13g1115 268 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Vvi13g1115 268 Gene3D - 80 249 IPR015943 GO:0005515
Vvi13g1115 268 Gene3D - 7 70 - -
Vvi13g1115 268 MobiDBLite consensus disorder prediction 66 119 - -
Vvi13g1115 268 PANTHER - 24 255 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1115 Vvi-Chr13 18108785 18109682 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi13g1115 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1115 - - vvi:100247208 530.406