Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1101 ATGGAAGCTGTGGGAGACGCTCTTCTTTCTGCTGCCATCGGCCTCTTGTTTGATAAGTTGGCCTCCACTGATTTGCTCGACTTTGCACGCCAACAATGGGTGTACTCTGATCTCAAGAAATGGGAGATAGAATTGTCGAATATTCGTGAAGAGCTTAATGACGCGGAGGACAAGCAGATCACGGATCACTCTGTGAAAGAGTGGCTGGGCAATCTGAAGGATTTGGCTTATGATATGGAGGACATCTTGGATGGGTTCGCCTACGAAGCTTTGCAACGGGAACTCACGGCCAAAGAAGCTGATCATCAAGGCAGGCCGAGCAAGGTACGCAAGCTCATCTCCACTTGTCTTGGCATTTTCAATCCTAATGAGGTTATGCGTTATATTAACATGAGGTCCAAGGTGTTGGAAATCACTCGCCGCTTACGAGATATTTCGGCTCAAAAATCTGAGCTTCGTCTAGAAAAGGTGGCTGCGATAACCAACTCTGCTAGGGGAAGGCCAGTCACCGCATCTCTAGGATATGAACCTCAGGTCTATGGCAGGGGGACAGAAAAAGAGATTATAATTGGTATGCTGCTTAGGAATGAACCCACTAAAACCAATTTTTCTGTAGTTTCCATCGTGGCCACGGGTGGGATGGGCAAGACCACACTGGCAAGACTGGTGTACGATGACGATAAGACCGTAACCAAGCATTTTGATAAAAAAGCCTGGGTTTGTGTCTCAGATCAGTTCGATGCAGTGAGAATAACAAAGACAATTCTCAACTCGGTGACTAATTCTCAAAGCAGTGATTCACAAGACTTGCATCAAATCCAAGAAAATTTGAGGAAGGAATTGAAGGGAAAAAAATTTCTGATAGTTTTGGATGATTTGTGGAATGATGATTACTTTGAGTTGGACAGGCTATGCTCCCCTTTCTGGGTGGGAGCACAGGGAAGCAAAATTCTAGTCACAACTCGCAATAATAATGTTGCAAACAAGATGAGAGGACGCAAGATCTTACATGAGCTCAAACAGTTACCATATGATGATTGTTTGAAGATATTTCAAACACATGCTTTTGAACATATGAATATCGATGAGCACCCAAATTTGGAATCAATTGGTAGGAGAATTGTAGAGAAGTGTGGAGGTTCTCCCTTAGCGGCAAGAGCCCTTGGTGGCCTTTTGCGCTCTGAACTACGTGAATGTGAATGGGAAAGAGTATTGTACAGCAAAGTATGGAATTTAACAGACAAGGAATGTGACATCATCCCTGCCTTGAGATTGAGCTACTATCATCTGTCTTCACATTTAAAGAGGTGTTTTACTTATTGCGCAAATTTTCCCCAGGATTATGAGTTTACAAAGCAAGAGTTAATCCTCCTGTGGATAGCGGAGGGGTTAATTCAACAATCAAAAGATAATAGGAAAATGGAAGATCATGGTGATAAGTATTTTGATGAGCTATTGTCAAGGTCATTTTTTCAATCGTCAAGCAGCAATAGATCACGATTCGTGATGCATGACCTTGTCCATGCTCTAGCTAAATCTATTGCTGGAGACACATGCTTGCATTTGGATGATGAGTTGTGGAATGATTTGCAATGCTCCATTTCTGAAAATACTCGTCATTCATCATTCACCCGTCATTTTTGTGATATCTTTAAAAAATTTGAAAGGTTTCATAAGAAAGAGCACTTGCGCACATTCATAGCTTTGCCGATTGATGAATCAACTAGTAGACGTCATTCCTTCATAAGTAATAAGGTGCTTGAAGAATTGATACCAAGGTTAGGGCACTTAAGGGTGCTCTCATTGGCTCGTTACATGATAAGTGAGATACCGGATTCATTTGGTGAGTTGAAACATTTGAGATACCTTAATTTGTCCTACACCAATATAAAATGGTTACCCGATTCAATTGGTAATCTTTTTTATCTTCAAACATTGAAATTATCATGCTGTGAAAAGCTTATCAGGTTGCCTATTAGCATCGGTAACCTAATCAATCTTCGACATCTTGATGTTGCTGGTGCAAAACAATTACAAGAAATGCCTGTACAAATTGGCAAACTAAAAGATTTGCGGATATTGTCTAATTTCATTGTGGACAAAAACAACGGTTTGACAATCAAAGGGTTGAAAGACATGTCACATCTGCGAGAACTTTGCATTTCGAAATTGGAAAATGTGGTGAATATTCAAGATGCAAGGGATGCCGATTTAAAATTGAAGCGTAACCTTGAAAGCTTGATAATGCAGTGGAGTTCTGAGCTGGATGGTTCAGGGAATGAAAGGAATCAAATGGATGTCCTTGACTCTCTACAACCTTGTTTGAATCTGAACAAACTCTGCATTAAGTGGTATGGTGGTCCAGAATTCCCACGTTGGATAGGGGATGCCTTGTTCTCTAAGATGGTGGATCTCAGTCTCATAGATTGCAGAGAGTGCACGTCTTTACCATGCTTGGGGCAGTTGCCATCGCTCAAACAGTTGAGGATCCAAGGAATGGATGGAGTAAAAAAAGTGGGTGCAGAGTTTTATGGAGAGACTCGTGTTTCTGCAGGTAAGTTTTTCCCATCACTAGAGTCTCTACATTTTAATCGCATGTCAGAATGGGAGCAATGGGAGGACTGGTCTTCCTCAACAGAGTCATTATTCCCTTGTCTCCATGAGCTTACAATTGAGGATTGCCCCAAATTGATTATGAAACTGCCCACTTACTTACCTTCTCTTACAAAGCTCTCTGTTCACTTTTGTCCAAAATTGGAGTCTCCACTTTCAAGACTTCCACTGCTGAAGGGATTACAAGTAAAAGAATGTAATGAGGCGGTCTTGAGCAGTGGAAATGACCTCACCTCACTCACCAAGTTAACAATTTCTGGGATTTCAGGGCTTATCAAATTGCATGAAGGATTTGTGCAATTTTTGCAAGGGCTTCGGGTTTTGAAAGTATCGGAATGTGAAGAACTCGTATATTTGTGGGAGGATGGTTTTGGATCGGAAAACTCTCATTCTCTTGAGATTAGAGATTGTGACCAACTTGTATCCTTGGGATGCAATCTTCAGTCTTTGGAAATAAGTGGATGTGATAAACTAGAGAGGCTTCCAAATGGATGGCAGAGTCTAACATGCCTTGAAGAATTGACAATCAGGGATTGTCCAAAGCTAGCGTCATTTCCAGATGTAGGTTTCCCACCAATGCTGAGAAATCTTATTCTTGAGAATTGTGAAGGTCTAAAGAGTCTACCTGATGGCATGATGTTGAAGATGAGGAACGACAGTACTGACAGCAACAACTTGTGTCTCCTTGAATGCTTAAGTATATGGAACTGTCCATCTCTCATTTGCTTTCCAAAAGGGCAATTACCCACCACCCTTAAGAGTCTACACATATTGCATTGTGAAAATCTCAAGTCTCTTCCAGAAGAAATGATGGGCACGTGTGCCCTTGAAGACTTTTCTATAGAGGGGTGTCCGTCTCTTATTGGATTACCGAAAGGTGGGTTACCCGCCACTCTCAAGAAACTCAGAATATGGAGTTGTGGAAGGCTAGAGTCTCTACCTGAGGGAATAATGCACCAACATTCCACCAATGCAGCTGCTCTCCAAGTCTTGGAAATCGGTGAATGTCCATTTCTCACATCCTTCCCAAGAGGCAAGTTTCAATCCACCCTTGAGCGACTTCACATTGGGGATTGTGAACGCCTCGAGTCAATTTCAGAGGAGATGTTTCACTCTACTAATAATTCACTTCAATCGTTAACCCTCAGGAGGTATCCTAATCTCAAAACCCTACCAGATTGCCTCAACACCCTCACAGATCTACGTATTGAAGATTTTGAAAATCTGGAATTGTTGCTTCCTCAGATAAAAAAGCTCACTCGTCTTACATCACTCGAGATCTCTCACTCTGAGAATATCAAGACCCCCCTATCCCAATGGGGCCTTTCCAGACTCACCTCTCTTAAAGACCTCTTGATTAGTGGCATGTTTCCAGATGCAACTTCCTTTTCGGATGACCCCCACTCGATTATTTTTCCTACAACTCTCTCCTCCCTTACCCTTTTAGAATTCCAGAATCTGGAATCCCTAGCCTCCCTGTCTCTCCAAACCCTCACCTCTCTTGAAAAGCTAGAAATCTACAGTTGCCCTAAGCTCCGATCGATTTTGCCAACGGAAGGACTATTGCCTGACACCCTTTCACGACTGTATGTGCGGGATTGCCCACATCTAACACAAAGGTACTCGAAGGAGGAAGGAGATGATTGGCCCAAGATTGCCCACATTCCCTATGTGGATATAGATGACCAATCCATCTGA 4311 0.4231 MEAVGDALLSAAIGLLFDKLASTDLLDFARQQWVYSDLKKWEIELSNIREELNDAEDKQITDHSVKEWLGNLKDLAYDMEDILDGFAYEALQRELTAKEADHQGRPSKVRKLISTCLGIFNPNEVMRYINMRSKVLEITRRLRDISAQKSELRLEKVAAITNSARGRPVTASLGYEPQVYGRGTEKEIIIGMLLRNEPTKTNFSVVSIVATGGMGKTTLARLVYDDDKTVTKHFDKKAWVCVSDQFDAVRITKTILNSVTNSQSSDSQDLHQIQENLRKELKGKKFLIVLDDLWNDDYFELDRLCSPFWVGAQGSKILVTTRNNNVANKMRGRKILHELKQLPYDDCLKIFQTHAFEHMNIDEHPNLESIGRRIVEKCGGSPLAARALGGLLRSELRECEWERVLYSKVWNLTDKECDIIPALRLSYYHLSSHLKRCFTYCANFPQDYEFTKQELILLWIAEGLIQQSKDNRKMEDHGDKYFDELLSRSFFQSSSSNRSRFVMHDLVHALAKSIAGDTCLHLDDELWNDLQCSISENTRHSSFTRHFCDIFKKFERFHKKEHLRTFIALPIDESTSRRHSFISNKVLEELIPRLGHLRVLSLARYMISEIPDSFGELKHLRYLNLSYTNIKWLPDSIGNLFYLQTLKLSCCEKLIRLPISIGNLINLRHLDVAGAKQLQEMPVQIGKLKDLRILSNFIVDKNNGLTIKGLKDMSHLRELCISKLENVVNIQDARDADLKLKRNLESLIMQWSSELDGSGNERNQMDVLDSLQPCLNLNKLCIKWYGGPEFPRWIGDALFSKMVDLSLIDCRECTSLPCLGQLPSLKQLRIQGMDGVKKVGAEFYGETRVSAGKFFPSLESLHFNRMSEWEQWEDWSSSTESLFPCLHELTIEDCPKLIMKLPTYLPSLTKLSVHFCPKLESPLSRLPLLKGLQVKECNEAVLSSGNDLTSLTKLTISGISGLIKLHEGFVQFLQGLRVLKVSECEELVYLWEDGFGSENSHSLEIRDCDQLVSLGCNLQSLEISGCDKLERLPNGWQSLTCLEELTIRDCPKLASFPDVGFPPMLRNLILENCEGLKSLPDGMMLKMRNDSTDSNNLCLLECLSIWNCPSLICFPKGQLPTTLKSLHILHCENLKSLPEEMMGTCALEDFSIEGCPSLIGLPKGGLPATLKKLRIWSCGRLESLPEGIMHQHSTNAAALQVLEIGECPFLTSFPRGKFQSTLERLHIGDCERLESISEEMFHSTNNSLQSLTLRRYPNLKTLPDCLNTLTDLRIEDFENLELLLPQIKKLTRLTSLEISHSENIKTPLSQWGLSRLTSLKDLLISGMFPDATSFSDDPHSIIFPTTLSSLTLLEFQNLESLASLSLQTLTSLEKLEIYSCPKLRSILPTEGLLPDTLSRLYVRDCPHLTQRYSKEEGDDWPKIAHIPYVDIDDQSI* 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1101 1436 Gene3D Ribonuclease Inhibitor 1266 1416 IPR032675 -
Vvi13g1101 1436 Gene3D Ribonuclease Inhibitor 571 738 IPR032675 -
Vvi13g1101 1436 Gene3D Ribonuclease Inhibitor 739 909 IPR032675 -
Vvi13g1101 1436 PANTHER DISEASE RESISTANCE PROTEIN RP 38 894 IPR044974 GO:0006952
Vvi13g1101 1436 FunFam Probable disease resistance protein At1g63360 427 513 - -
Vvi13g1101 1436 Gene3D Ribonuclease Inhibitor 1094 1263 IPR032675 -
Vvi13g1101 1436 Pfam Rx N-terminal domain 9 99 IPR041118 -
Vvi13g1101 1436 FunFam Probable disease resistance protein At1g61300 162 334 - -
Vvi13g1101 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 441 IPR027417 -
Vvi13g1101 1436 SUPERFAMILY L domain-like 886 1084 - -
Vvi13g1101 1436 Pfam NB-ARC domain 186 406 IPR002182 GO:0043531
Vvi13g1101 1436 SUPERFAMILY L domain-like 1094 1424 - -
Vvi13g1101 1436 SUPERFAMILY L domain-like 502 932 - -
Vvi13g1101 1436 Gene3D - 164 336 IPR027417 -
Vvi13g1101 1436 Gene3D - 421 514 IPR036388 -
Vvi13g1101 1436 Gene3D - 11 125 - -
Vvi13g1101 1436 Coils Coil 38 58 - -
Vvi13g1101 1436 Gene3D Ribonuclease Inhibitor 918 1093 IPR032675 -
Vvi13g1101 1436 PRINTS Disease resistance protein signature 378 392 - -
Vvi13g1101 1436 PRINTS Disease resistance protein signature 280 294 - -
Vvi13g1101 1436 PRINTS Disease resistance protein signature 205 220 - -
Vvi13g1101 1436 PRINTS Disease resistance protein signature 971 987 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1101 Vvi-Chr13 17686535 17690845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1101 206 695 WRKY Transcription Factor Family AT5G45050 24.053 1.30e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1101 - - vvi:100260928 2823.88