Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1096 ATGAGGATACGAAGGAAGAATAACAATGAGATTGTTCCTAAGCGTGATATTACTATTGCGGACAAGACGAAGAAAAGTGTTGTGGTCTCTTTGTGGAATGATCATGAATTGTTGGATAATGCTGATAAATTTCCAATTATTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGCTTCTATTGGGTCTGATATCAGTCCTTCATCTAAGGGTGGAGTGAGGTCCATGTACTATGACAGGGTTTCCCTTTCTCATGTAACCAGCAACCCATCTTTGGGTGAAGACAAGCCTTCATTTTTTAGCATCAGAGCATACATAAGCTTCATCAAGCCTGAGCAAACAATGTGGTACCAGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGAATCTGGGTATTGGTGTGAAGGATGTGAAAAGAATGATGATGAGTGCAGTTGA 447 0.3982 MRIRRKNNNEIVPKRDITIADKTKKSVVVSLWNDHELLDNADKFPIIAIKSLKVGDFQASIGSDISPSSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPEQTMWYQACKTCNKKVTDAIESGYWCEGCEKNDDECS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1096 148 Pfam Replication protein A OB domain 2 63 IPR031657 -
Vvi13g1096 148 SUPERFAMILY Nucleic acid-binding proteins 3 62 IPR012340 -
Vvi13g1096 148 SUPERFAMILY Nucleic acid-binding proteins 77 147 IPR012340 -
Vvi13g1096 148 Pfam Replication factor-A C terminal domain 99 147 IPR013955 -
Vvi13g1096 148 Gene3D - 62 148 IPR012340 -
Vvi13g1096 148 PANTHER REPLICATION FACTOR A 1, RFA1 3 126 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1096 Vvi-Chr13 17535424 17536364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1096 1 148 Core DNA Replication Machinery Family AT5G08020 58.115 8.45e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1096 K07466 - vvi:100255412 267.314