Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1095 ATGGTAGTGAAAGTTTCAGATGATAGTGGTGAAGCTTGCCTTGCTCTGTTTAATGAACAAGCAGAGAGAATATTTGGGTGCTCTGCTGATGAGCTTGATAAGCTTAAATCACAGGAGGGAGAGGAGAACCGATTCCAGCAGAAATTGAAGGAAGCTATTTGGGTCCCTCATCTTTTCCGGATTAGTGTTGCACAACATGAATACATGAATGAGAAAAGGCAGTGGATAACAGCCAAGGCTGTTGTGGCAGTTGATTTTGCAGCTAAATCCAGATTACTGTTGGAGGAGATATCAAAGATGAAGACTTCACAATAG 315 0.419 MVVKVSDDSGEACLALFNEQAERIFGCSADELDKLKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEYMNEKRQWITAKAVVAVDFAAKSRLLLEEISKMKTSQ* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1095 104 SUPERFAMILY Nucleic acid-binding proteins 2 100 IPR012340 -
Vvi13g1095 104 FunFam - 1 102 - -
Vvi13g1095 104 Pfam Replication factor-A C terminal domain 1 92 IPR013955 -
Vvi13g1095 104 CDD RPA1_DBD_C 1 99 IPR047192 -
Vvi13g1095 104 Gene3D - 1 102 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1095 Vvi-Chr13 17534794 17535304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1095 1 104 Core DNA Replication Machinery Family AT5G08020 63.462 5.88e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1095 K07466 - vvi:100257441 201.06