Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1088 ATGATATTGAACCCCCCTTATGTAACACTTGAAGGTGGTCTGAGAATACCTGAAAGCATTTTCAGCAAACTTTTTTATTATCAAAAGGTGGAGGTTCAGTGGCTGTGGGAACTGCATTGCCAACAAGTAGGTGGAATTATTGGAGATGAGATGGGACTTGGCAAGACTATCCATGTATTGTCTTTTCTTGGAGCATTGCATTTCAGTAATATGTATAAACCAAGTATAAACCGTGTTTTGAGGTCACAGAGTAGATTACTTATCACTACTTATGAGCCAATCCGGTTGCAAGCTGGAAAGCTACTTGATATCAAACGGGGTTATGCAATTTTAGATGAAGAACACCGAATTCGGAATTCAAATGCTGAAGTTACCATACTCCATAAACAGTTACAGACTGTTCATCGTATAATAACGACTGGTGCGTCAATTCAGAATAAGTTGGCTGAGCTGTGGTCTTTGTTCGATTTTATATTCCCTGGGAAGTTGAGAGTGTTGCATATATTTGAAGCAGAATTTGCAGTTCCTATATTTGTTGGTGGCTATGGCAATGCTTCTCCATTACAAGTATCCACCGTTTACAGGTGTGCAGTAGTCCTACGTGACTTGAGTTCTTCACGGTCTAATATCCTGGGTGAGGCTAATATCATCCTTGCTGATTATTCCATTGCTCTAAAGCCTTATATTGTTGCACTGCCTCTTCATGGATGCAATTCTGAATCTGTATTACATGTTATTGTGAAGATGTTAACTTCTAAAAACGGGTTCAGAGAGTTTGAGCAGCAGATGAAACTGAGAGAGAGAGGGTTGCAGATGAACACTAGACAAAATAAGCGTGATGGATCTAATGGAGGAGAGGCATTATCATCCAAAGAAACTGTCAATGAACACATGGATAAAATCAGTGCAAGGGTTAGATTCAAACCAGAATTAACGGAGCTTCCTTCACTCGAAGAAGATGGAGGATTAAATGATGAATATTTTGACTCAACTATTGGATTTGATGGCTCATTGAATACATCAGAAAGTTTATGTGCTGAACAGCATGATACCTCCAGCACACATGAAATCGATAGCCTTAAAAGCATAATCTCTGGTGATTTAAATGGACTTTCCTACATTCAAAGCCCTCAGACGGAGAAAGGGGACCCATCAGATCAGAGGTTTTTGGCACAGGGAAGCAATGATTGGGTCCATGGATGGAGTCCAGATTATTCTGCGAATAATGACTGGGCAATTGCTTATGAAGAGAATAATAGGATTAGAAGAAGCTCGGAAGTTGTAGAGTCTTCTATTATTGAGCTTAAGCTGGAGGTGGTGATGTCCAAACTTGATTCAGAGAACAAAGTAGGAAAGTTGAAGAATCCTAATATAAAATTGCAGTTGGAGAATTCTGATTTGTAA 1404 0.3939 MILNPPYVTLEGGLRIPESIFSKLFYYQKVEVQWLWELHCQQVGGIIGDEMGLGKTIHVLSFLGALHFSNMYKPSINRVLRSQSRLLITTYEPIRLQAGKLLDIKRGYAILDEEHRIRNSNAEVTILHKQLQTVHRIITTGASIQNKLAELWSLFDFIFPGKLRVLHIFEAEFAVPIFVGGYGNASPLQVSTVYRCAVVLRDLSSSRSNILGEANIILADYSIALKPYIVALPLHGCNSESVLHVIVKMLTSKNGFREFEQQMKLRERGLQMNTRQNKRDGSNGGEALSSKETVNEHMDKISARVRFKPELTELPSLEEDGGLNDEYFDSTIGFDGSLNTSESLCAEQHDTSSTHEIDSLKSIISGDLNGLSYIQSPQTEKGDPSDQRFLAQGSNDWVHGWSPDYSANNDWAIAYEENNRIRRSSEVVESSIIELKLEVVMSKLDSENKVGKLKNPNIKLQLENSDL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1088 467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 161 IPR014001 -
Vvi13g1088 467 MobiDBLite consensus disorder prediction 271 295 - -
Vvi13g1088 467 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 1 7 IPR002052 GO:0003676|GO:0008168|GO:0032259
Vvi13g1088 467 PANTHER SNF2/RAD54 FAMILY MEMBER 8 76 - -
Vvi13g1088 467 Gene3D - 78 206 IPR038718 -
Vvi13g1088 467 Pfam SNF2-related domain 79 181 IPR000330 GO:0005524|GO:0140658
Vvi13g1088 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 203 IPR027417 -
Vvi13g1088 467 SMART ultradead3 20 178 IPR014001 -
Vvi13g1088 467 Gene3D - 14 77 IPR038718 -
Vvi13g1088 467 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1088 Vvi-Chr13 17382918 17385180 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi13g1088 SNF2_N 9.7e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1088 - - vvi:104881249 890.567