Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1065 ATGCCATCGCAAACTATGACCGAAGAAGGAACTCCAGCTAACACAAAAATTCATGCAATTGAAGAGCTTCCAGCAGCACCATTAGGAGCAAAACAAGAATCAAAGGTCTTGAGAAAGGCGACAAAACTAAAACCTAGGGTTTCGACCACAAAAAAACCAACAGATCGGCATGTGAAGGTGGAGGGACGTGGGCGAAGCATTCGGCTACCAAATGGATGTGCAAATGAACTCTTTGAGCTCACACGACGACTCAACTACAAGTGGGCTGGCCAAACCATCTGTTGGCTTTTGGAGAATGTCGAACCAGCAATCATCAAAGCCACCAGTACAAGGGAGAAGAAGAACTAG 348 0.4598 MPSQTMTEEGTPANTKIHAIEELPAAPLGAKQESKVLRKATKLKPRVSTTKKPTDRHVKVEGRGRSIRLPNGCANELFELTRRLNYKWAGQTICWLLENVEPAIIKATSTREKKN* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1065 115 ProSiteProfiles TCP domain profile. 53 107 IPR017887 -
Vvi13g1065 115 Pfam TCP family transcription factor 54 112 IPR017887 -
Vvi13g1065 115 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 110 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1065 Vvi-Chr13 16877290 16877637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1065 31 110 TCP Transcription Factor Family AT5G51910 56.790 1.76e-21 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi13g1065 TCP 2.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1065 - - vvi:104881255 234.572