Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1058 ATGTTCCGTTTTCTCCTCAACTCCAATTCAACTCTTCTTCGCATCTTCTCCTTCAGACCGCTCTCCTCCGCCACCGCCACCTCCACCGTAGATTACCTCACAAATACCCTGGGCTTTGCCCGCGAGTCAGCCGTCGCTGTCGCCGAGGAACTCAACATCAAAACCACCACCAGGCCCGATTTAGTTGTCCAACTTTTCAAAAGCTACGGTTTCACCCCAACTCACATCGCCACCATCGTCTCCAAGCACCCTTCTCTCCTCTTAGCCGACCCAGTTAAAACCCTCGCACCCAAGCTTCAATTCTTTTCCAATAATGGGGTCTCTGGTTCTGCCCTCGTCCACATTGTCTCCGCCGACCCTGTGATACTCAGACGAAGCTTGCAGAACCAAATCATCCCCTGCATTTCCTTCCTCAAAAAGGTCTTACCCACCGATCACAAAATCGCGTCTCTCCTCACTGCCAAGCGCGGCACTTGGGTCGTCCACAAGTTTTCTGAAAAAATGGTGCCAAACATTGAGACACTGCGAAGCCATGGCGTGCCGGAGTCGAATATTTTGCGGATGCTGATCTTGCGACCGCGGACACTGTCGTTCAATACTGGTGCGTTTAAGGGCATCCTTAAGAGGGTTAAGGAAATGGGGTTTGATGAAAACGGTTTGATGTTCATTCATGGGGTGTGCACATTATGTGGAATGAAGAAGGCAAAATGGGAGTCAAAAGTGAGTGTCTTCAGGAGTTTTGGTTGGGGGGAGGAGGAGGTTATAGCGTTATTTGTGAAGCAGCCCAAGTTTATGAACTCCTCAGAAGCAAGGATCAAGAAATCCTTGGATTTTTTTATGAATGAGTTGCATTGGATGCCAGAGGATATTTCCAAGTACCCAATTGTGCTTTTCCTTAGCTTTGAGAAGAGAGTGGTCCCCAGGTCTCGTGTCCTTCAGCTTCTGATTGAAAAGGGTCTTGTGACTAGAAGGAGTATGGGGAGGGCATTGATAATCCCTGAAGATCAATTCTTGAAAGTTTTTATGTCCAGTTATGAAAAGAAGATCCCAGAGCTGTGGGAGATTTACCAAAGTAATAAAGTGGGATTGCCCCGGTCAGCAGTTTCAGTTTGA 1113 0.4798 MFRFLLNSNSTLLRIFSFRPLSSATATSTVDYLTNTLGFARESAVAVAEELNIKTTTRPDLVVQLFKSYGFTPTHIATIVSKHPSLLLADPVKTLAPKLQFFSNNGVSGSALVHIVSADPVILRRSLQNQIIPCISFLKKVLPTDHKIASLLTAKRGTWVVHKFSEKMVPNIETLRSHGVPESNILRMLILRPRTLSFNTGAFKGILKRVKEMGFDENGLMFIHGVCTLCGMKKAKWESKVSVFRSFGWGEEEVIALFVKQPKFMNSSEARIKKSLDFFMNELHWMPEDISKYPIVLFLSFEKRVVPRSRVLQLLIEKGLVTRRSMGRALIIPEDQFLKVFMSSYEKKIPELWEIYQSNKVGLPRSAVSV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1058 370 PANTHER CGI-12 PROTEIN-RELATED 26 345 IPR003690 GO:0003690|GO:0006355
Vvi13g1058 370 FunFam Mitochondrial transcription termination factor-like 127 349 - -
Vvi13g1058 370 Gene3D Transcription termination factor 3, mitochondrial 130 357 IPR038538 -
Vvi13g1058 370 Pfam mTERF 232 337 IPR003690 GO:0003690|GO:0006355
Vvi13g1058 370 Pfam mTERF 64 276 IPR003690 GO:0003690|GO:0006355
Vvi13g1058 370 SMART mt_12 186 216 IPR003690 GO:0003690|GO:0006355
Vvi13g1058 370 SMART mt_12 77 108 IPR003690 GO:0003690|GO:0006355
Vvi13g1058 370 SMART mt_12 287 321 IPR003690 GO:0003690|GO:0006355
Vvi13g1058 370 SMART mt_12 220 250 IPR003690 GO:0003690|GO:0006355
Vvi13g1058 370 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Vvi13g1058 370 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1058 Vvi-Chr13 16644321 16645433 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi13g1058 mTERF 7.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1058 K15032 - vvi:104881242 727.243