Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1055 ATGTTAGCATTCTCCCCTCCATCGTTTCCAACCCTTGGATGGCCCTTGGAGGATCCCATAAGCCATGCACAGAACTACATATATGGAGAAACAGAAACTTCAGAATCGTTTCTTCACTTATCCTCATCTCAGCCACAAGTGGAACTCAATTGCTCCACCCCATCTGCAGCAGTTCGTGGTAATCCCACGATGGTTAAGAAACTTAACCACAACGCCAGTGAGCGGGATCGTCGGAAGAAGATCAACAGCTTGTACTCCTCTATGCGTTCACTACTTCCATCAGCTGATCAAGTGAAGAAATTAAGCATTCCTTCGACAGTTTCACGTGTGCTAAAATACATACCAGAACTGCAACGACAAGTGGAGAGATTGATTCAAAAGAAAGAAGAGTTTTTATCAAAGATTTCTAGGGAAGGAGATCCAATTCACCTAGAAAATCAAAGAAATGGCACACTTGGAAGCTCTTTATCTGCTGTTTCAGCAAGAAGGCTTAGTGACAGGGAAATTGTGGTTCAGATATCCACATTTAATGTCCATGAGAATCCTCTTTCTGAGGTTTTGTCAAATTTGGAGGAGGATGGGCTTCTTGTAATCAATGCATCATCTTTTGAGTCCTTTGGAGGGAGGGTGTTCTACAACTTACATCTTCAGGTTGAAGGAACTCAAGGAATGGAGTGTGAGTTGTTGAGCGAGAAGCTACTTTCATTGTGTGAAAGGAGAGAGGCTTTTCCATGA 735 0.4286 MLAFSPPSFPTLGWPLEDPISHAQNYIYGETETSESFLHLSSSQPQVELNCSTPSAAVRGNPTMVKKLNHNASERDRRKKINSLYSSMRSLLPSADQVKKLSIPSTVSRVLKYIPELQRQVERLIQKKEEFLSKISREGDPIHLENQRNGTLGSSLSAVSARRLSDREIVVQISTFNVHENPLSEVLSNLEEDGLLVINASSFESFGGRVFYNLHLQVEGTQGMECELLSEKLLSLCERREAFP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1055 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 117 IPR011598 GO:0046983
Vvi13g1055 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 57 236 - -
Vvi13g1055 244 FunFam Transcription factor ORG2 61 146 - -
Vvi13g1055 244 Pfam Helix-loop-helix DNA-binding domain 66 118 IPR011598 GO:0046983
Vvi13g1055 244 Gene3D - 60 146 IPR036638 GO:0046983
Vvi13g1055 244 SMART finulus 71 123 IPR011598 GO:0046983
Vvi13g1055 244 Coils Coil 114 134 - -
Vvi13g1055 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 134 IPR036638 GO:0046983
Vvi13g1055 244 CDD bHLH_AtORG2_like 66 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1055 Vvi-Chr13 16605525 16607794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1055 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 47.809 1.93e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi13g1055 HLH 5.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1055 - - vvi:100247143 456.832