Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1038 ATGGTGAAGAGGAGCTCCCCTGGTTCTTCCTCCTCCCCCTCCTCCTCCTCCACCTCCTCCGACGCCGCATCTCGCCCTGCTCCTCCCTCGGGAGGCAAGCCCAAAAGCAGGAAGAAGGAGGCGAAGAAGAATTCAAATGGCAACGGTAGCAACTCGAAAAACAAGAGAACCTCCATTTACAGGGGAGTCACCAAGCACAGATGGACGGGGAGGTTTGAAGCCCATCTGTGGGACAAGAGCTCCTGGAATGATATCTCGAACAAGAGAGGAAGACAAGGTGCATACTATAATGAGGAAGCCGCTGCTCGTACCTACGATCTCGCTGCCCTTAAGTATTGGGGTCCTACTACACCCTTGAATTTTCCGCTTGAGACCTACCAGAAGGATGCGGAAGAAATGGAGAAGATGTCGAAGGAGGAATATTTAGCTCTGCTCCGCCGGCAAAGCAATGGGTTTTCCCGGGGAGTCTCTAAGCACCACCACAATGGGCGGTGGGAGGCGCGGATCGGGCGGGTCCTTGGAAACAAATATCTCTACCTGGGAACATACAGCACACAAGAGGAGGCAGCTGCAGCATATGACATGGCAGCCATAGAATACAGAGGTCTAAATGCAGTTACCAATTTTGATATCAGCAACTATGTCAAACTGGGCCGAGTGGAAGCCCAGGTCCAGGAGCTGGCCCAACAACTCCAGCCCAATACCCCTATTGGGCCACAAAATGAATTGCAAAAGGAGGAAGAAGAGCAGCTTCAGGAGCCAGTGCTTTCATCATCACAGCACCTTCCTTCCATGGACTCATCTGCAATGGAGATAATGGATCCGGCTGACGACCCTGACCTCCCATGGAACTTCTGTGCCTACAGCACCCTCCTAGTCCCGGACGTGCCCCTCGGAAAGGGTGGGGAGTTGTCGGATTTGTTTTATGAGAAGGGGTTTGAGGACAACATTGACTACATGTTTGAAGGGGCTGCAGGCAATGAGGAAGAGAGTAATAGTGCAGAAAATGGTGTAAAGGAGAATGGCTTGTCCTCATCTTCTTCTTCTTCTTCAGGTTGTGATTCAGCATCTCCTGCCTCAACAACTACCTTGGCTTCTTGTACTTACTCTATGTGA 1116 0.5143 MVKRSSPGSSSSPSSSSTSSDAASRPAPPSGGKPKSRKKEAKKNSNGNGSNSKNKRTSIYRGVTKHRWTGRFEAHLWDKSSWNDISNKRGRQGAYYNEEAAARTYDLAALKYWGPTTPLNFPLETYQKDAEEMEKMSKEEYLALLRRQSNGFSRGVSKHHHNGRWEARIGRVLGNKYLYLGTYSTQEEAAAAYDMAAIEYRGLNAVTNFDISNYVKLGRVEAQVQELAQQLQPNTPIGPQNELQKEEEEQLQEPVLSSSQHLPSMDSSAMEIMDPADDPDLPWNFCAYSTLLVPDVPLGKGGELSDLFYEKGFEDNIDYMFEGAAGNEEESNSAENGVKENGLSSSSSSSSGCDSASPASTTTLASCTYSM* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1038 371 SUPERFAMILY DNA-binding domain 58 124 IPR016177 GO:0003677
Vvi13g1038 371 MobiDBLite consensus disorder prediction 329 371 - -
Vvi13g1038 371 MobiDBLite consensus disorder prediction 326 371 - -
Vvi13g1038 371 SUPERFAMILY DNA-binding domain 153 212 IPR016177 GO:0003677
Vvi13g1038 371 Gene3D AP2/ERF domain 59 124 IPR036955 GO:0003700|GO:0006355
Vvi13g1038 371 Gene3D AP2/ERF domain 154 212 IPR036955 GO:0003700|GO:0006355
Vvi13g1038 371 SMART rav1_2 59 128 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 MobiDBLite consensus disorder prediction 230 262 - -
Vvi13g1038 371 CDD AP2 58 122 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 CDD AP2 154 212 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 ProSiteProfiles AP2/ERF domain profile. 59 122 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 Pfam AP2 domain 59 114 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vvi13g1038 371 MobiDBLite consensus disorder prediction 1 25 - -
Vvi13g1038 371 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 298 - -
Vvi13g1038 371 MobiDBLite consensus disorder prediction 1 62 - -
Vvi13g1038 371 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1038 Vvi-Chr13 16185005 16187800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1038 154 227 AP2-EREBP Transcription Factor Family AT1G72570 37.805 1.26e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi13g1038 AP2 4.4e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1038 - - vvi:100250488 617.461