Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1037 ATGAACACTGAAATGGTGGACATGGAAGGACAAAACCGGGAAAAATGTGCATTAGCACATGCTGAACCTAATAAGGGAGAAAGACAAAATATGATTGAAAATGCTACACAGAGAGAGGTATCCAGTCAAGATGATGATGGGGGTGCAAAACCACATGTGGCCATGGAATTCGAATCAGAAGAAGCTGCCAAGACCTTCTATGATCAATATGCCAGGCGTGTGGGTTTTAGCACCCACGTAGGTCAGTTCAGCCGTACTAAGCCTGATGGGCCAATCATTTCTTGGGATTTTGCATGTTCTAGGGAGGTTTTTAAAAGAAAGAATGTTGAAAGCTGCAATGCAATGCTTAGGATAGAGAGAAAGGATTCAGACAATTGGATTGTGACAAAATTTGTGGAGGACCATAACCATTCTACAATCACTCCCAGCAAGGTCCATTACCTTCGACCCCGTAGGCATTTTGCTGGTACTACAAAAAGTGTGGCCGAACCATATGATGCTCCAAGTGATATCTATGTTTCCATTGATGGAAATCATGTATCTTATGAACCAATTCGTGGAGTTGGAAATGCCTCCCCTCTAGAGCCAAATCTCCCAGCTAGAAGTATTGGGCCCGCCAATTATGTTAGACCTACCCGAAAAAGAACCCTTGGAAGAGATGCTCAGAATCTCTTGAATTATTTCAAGAAGATGCAGGCTGAGAACCCTGGCTTCTATTATGCAATCCAACTTGATGATGATAACCGTATGACTAATGTTTTTTGGGCTGATGCAAGATCAAGGACAGCTTATAATTACTTTGGTGATGCAGTCATCTTTGACACAATGTATAGACCAAATCAGTTTCAGGTTCCATTTGCTCCTTTCACCGGGGTTAATCATCATGGTCAGATGGTATTATTTGGCTGTGCATTACTTCTGGACGAGTCCGAGTCTTCCTTTACGTGGCTTTTCAAGACATGGCTATCTGCAATGAATGATTGCCCTCCTGTTTCTATAACCACAGACCAAGACAGAGCCATACAGGTAGCTGTTGCACATGTGTTCCCAGAAACTCGCCACTGCATTTGCAAGTGGCACATCTTGAGAGAAGGCCAAGAGAGGTTGGCTCACATATACCTTGCTCATCCTTCCTTCTACGGAGAGCTGTACAGCTGTATCAACTTTTCGGAGACAATTGAGGATTTTGAATCTTCATGGGCCTCTCTCCTTGATAGATATGATCTACAGAAAAATGAGTGGCTCCAAGCAGTATATAATGCTCGCAGGCAGTGGGCCCCAGTTTATTTTCGGGGCACTTTCTTTGCTGCTATTTCTTCAAACCAAGGGGTTAGCTCCTTTTTTGATGGTTATGTGAATCAACAGACCACCATACCAGTGTTTTTTAAGCAGTATGAAAGGGCTTTAGAAAATTCATTGGAAAAGGAAATAGAAGCAGATTATGACACAATTTGTACTAACCCAGTACTGAAAACACCATCACCAATGGAACAACAGGCAGCAAACCTCTATACCAAAAAGGTTTTTGCAAAGTTTCAAGAGGAATTAGTTGAAACTTTTGTTTATACTGCAAATAAGGTCGAGGATGATGGGGTGGCCAGTAAATACAGGGTTGCTAAATATGAACTTGATCACAAAGCGTACATGGTTACATTGAATGTTTCTGAGATGAAAGCAAGTTGCAGTTGTCAAATGTTTGAGTACTCGGGCATTCTCTGTAGACATATACTGACAGTATTTACTGTAACTAATGTTCTTACTCTTCCATTCCATTACATTTTGAAGAGATGGACAAGGAATGCAAAGACTGGGGTTGGATCAGATGAACAAGAATTAGATCAACATGGTATTGAGTCTCTGACTGTGCGCTTCAACAATCTCTGTCGAGAAGCCATTAAATATGCAGAAGAAGGAGCTATTGCTGTAGATACCTACAATGCAGCAATGGGTGTTTTAAGAGAGGGTGGAAAGAAAATTGCTGCTGTGAAGAAAGTTGTTGCTAAGATTATACCTCCCACCTCTCAGGGCAGCGGAAATAATCAAGAAGACAGTAACAAGAAATCCCCGGTATCAGCTTCTGAAATTGCACCATCTTTGTGGCCTTGGCAAGATGCAATGCCCCATCGCTTTAATCTTAACGACATTGGAGTTCCTGTTGCTGATTTGAATCAGCCTAGCATGGCGCCTGTGTCTATTCATCATGATGGTGGTCCCTCTGATAACCCGGTGGTTCTCACTTGTTTTAAGTCCATGACCTGGGTCATTGAAAATAAGAATTCAACACCAGCTGGTAAAGTGGCTGTCATCAACCTGAAGCTGCAAGATTATGGAAAAAGTCCTTTGGGGGAGACAGAGGTGCAGTTTAGGTTAACAAGGGTCACACTGGAGCCTATGTTGAGATCCATGGCCTACATCAGTCAGCAACTATCAACTCCAGCTAATAGGGTTGCTGTTATCAATCTTAAGCTCCAAGATACTAAGACAACTTCTGGAGAAACTGAGGTGAAATTTCAAGTTTCTAGAGATACCCTAGGTTCCATGTTGAGATCAATGGCTTACATCCGTGAGCAGCTTTGA 2577 0.423 MNTEMVDMEGQNREKCALAHAEPNKGERQNMIENATQREVSSQDDDGGAKPHVAMEFESEEAAKTFYDQYARRVGFSTHVGQFSRTKPDGPIISWDFACSREVFKRKNVESCNAMLRIERKDSDNWIVTKFVEDHNHSTITPSKVHYLRPRRHFAGTTKSVAEPYDAPSDIYVSIDGNHVSYEPIRGVGNASPLEPNLPARSIGPANYVRPTRKRTLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRTAYNYFGDAVIFDTMYRPNQFQVPFAPFTGVNHHGQMVLFGCALLLDESESSFTWLFKTWLSAMNDCPPVSITTDQDRAIQVAVAHVFPETRHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFSETIEDFESSWASLLDRYDLQKNEWLQAVYNARRQWAPVYFRGTFFAAISSNQGVSSFFDGYVNQQTTIPVFFKQYERALENSLEKEIEADYDTICTNPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKVEDDGVASKYRVAKYELDHKAYMVTLNVSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPFHYILKRWTRNAKTGVGSDEQELDQHGIESLTVRFNNLCREAIKYAEEGAIAVDTYNAAMGVLREGGKKIAAVKKVVAKIIPPTSQGSGNNQEDSNKKSPVSASEIAPSLWPWQDAMPHRFNLNDIGVPVADLNQPSMAPVSIHHDGGPSDNPVVLTCFKSMTWVIENKNSTPAGKVAVINLKLQDYGKSPLGETEVQFRLTRVTLEPMLRSMAYISQQLSTPANRVAVINLKLQDTKTTSGETEVKFQVSRDTLGSMLRSMAYIREQL* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1037 858 Pfam FAR1 DNA-binding domain 65 139 IPR004330 -
Vvi13g1037 858 Pfam MULE transposase domain 271 363 IPR018289 -
Vvi13g1037 858 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 660 IPR031052 GO:0006355
Vvi13g1037 858 MobiDBLite consensus disorder prediction 1 50 - -
Vvi13g1037 858 MobiDBLite consensus disorder prediction 671 693 - -
Vvi13g1037 858 MobiDBLite consensus disorder prediction 8 22 - -
Vvi13g1037 858 SMART 26again6 559 586 IPR006564 GO:0008270
Vvi13g1037 858 MobiDBLite consensus disorder prediction 672 692 - -
Vvi13g1037 858 Pfam SWIM zinc finger 550 582 IPR007527 GO:0008270
Vvi13g1037 858 ProSiteProfiles Zinc finger SWIM-type profile. 548 584 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1037 Vvi-Chr13 16143332 16149487 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi13g1037 MULE 2.5e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1037 - - vvi:100267671 1729.53