Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1033 ATGGGACAGGAAACAAGGAGACTTTTAGATGAATATGAAGTATCAGACGTTCTGGGGAGAGGAGGATTCTCAGTTGTGAGAAGGGGTACAAGGAAATCAAGTAGTGGTGAAAACCCTGTAGCCATCAAGACGCTGAAAAGGTGTGGACAAACGAATCTACCAGGACTCCCCCGTAACCGTGGCAGCGAGAAACGTGTGGCGTCGATGGCATTCCCTACATGGAAACAGGTGTCGATTTCAGATGCATTACTGACAAATGAAATCTTGGTTATGAGGAAAATAGTGGAACATGTTTCACCGCACCCCAATGTGATCAACCTCCACGACGTGTATGAGGACCCAAGCGGGGTTCACCTTGTGCTTGAGCTTTGTTCCGGGGGAGAGCTGTTTGATCGGATCGTGGCACAGGCGAGGTACTCAGAGGCTGGCGCTGCAGCTGTGGTTAAGCAGCTTGCAGAAGGGCTAAAGGCGCTACACCAGGCCAATATTATCCATAGAGACTTGAAGCCTGAGAATTGTCTATTCTTGGACAAAAGTGAGGATGCTACTTTGAAGATCATGGACTTTGGGCTGAGTTCTGTGGAGGAATTCACAGATCCAGTTGTGGGGTTGTTCGGTTCCATAGACTATGTGTCGCCAGAAGTTCTTTCTCAGGGCAAAATCTCATCTGCAAGTGATATGTGGTCTTTGGGAGTGATCTTGTATATTCTCCTCTCTGGGTATCCACCTTTCATCGCACAGTCAAATCGGCAGAAACAGCAAATGATAATAGCTGGAGACTTCAGCTTCTATGAGAAGACCTGGAAGAACATTTCTTCATCAGCAAAGCAATTAATTTCCAGTCTCCTCACAGTTGATCCTGAGAGGAGACCTACAGCTCACCAACTCCTCCAGCATCCATGGGTCATGGGAGATTCTGCCAAGCAGGATCAAATGGATGCAGAGATTGTTTCACGACTGCAGAGTTTTAATGCCCGGCGCAAATTCCGTGCTGCTGCAATTGCAAGTGTGTGGAGTAGCACGGTGTTCTTGAGAACAAAGAAGCTGAAAACTTTAGTAGGGTCCCATGACCTTACCCAGGAGGAACTTGAGAACCTGAGGATACATTTTAAGGAAATATGCTTAAAAGGCGACAATGCCACTCTATCTGAATTTGAGCAGGTGCTAAAAGCAATGAACATGTCATCACTAATTCCTCTGGCAGGCCGCATCTTTGATCTATTTGACAACAACCGAGATGGCACAGTTGACATGAGAGAGATACTCTGTGGGTTCTCCAGCCTCAGAAATTCACAAGGAGACGATGCTCTACGCTTGTGCTTCCAGATGTATGACACCGACAGGTCTGGATGCATTACCAAGGAAGAAGTAGCATCCATGCTCAGAGCTTTGCCAGATGACTGTCTTCCAGCAGATATCACAGAACCAGGGAAATTAGATGAGATATTTGACCTGATGGATGCCAACAGCGATGGAAAAGTCACCTTTGAAGAGTTCAAAACAGCCATGCAGAGAGATAGCTCCCTCCAAGATGTAGTCCTCTCCTCTCTCCGCCCACTATAG 1563 0.4696 MGQETRRLLDEYEVSDVLGRGGFSVVRRGTRKSSSGENPVAIKTLKRCGQTNLPGLPRNRGSEKRVASMAFPTWKQVSISDALLTNEILVMRKIVEHVSPHPNVINLHDVYEDPSGVHLVLELCSGGELFDRIVAQARYSEAGAAAVVKQLAEGLKALHQANIIHRDLKPENCLFLDKSEDATLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEVLSQGKISSASDMWSLGVILYILLSGYPPFIAQSNRQKQQMIIAGDFSFYEKTWKNISSSAKQLISSLLTVDPERRPTAHQLLQHPWVMGDSAKQDQMDAEIVSRLQSFNARRKFRAAAIASVWSSTVFLRTKKLKTLVGSHDLTQEELENLRIHFKEICLKGDNATLSEFEQVLKAMNMSSLIPLAGRIFDLFDNNRDGTVDMREILCGFSSLRNSQGDDALRLCFQMYDTDRSGCITKEEVASMLRALPDDCLPADITEPGKLDEIFDLMDANSDGKVTFEEFKTAMQRDSSLQDVVLSSLRPL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1033 520 PRINTS Recoverin family signature 494 514 - -
Vvi13g1033 520 PRINTS Recoverin family signature 358 377 - -
Vvi13g1033 520 PRINTS Recoverin family signature 428 447 - -
Vvi13g1033 520 PRINTS Recoverin family signature 404 425 - -
Vvi13g1033 520 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Vvi13g1033 520 Pfam Protein kinase domain 62 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1033 520 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Vvi13g1033 520 CDD STKc_CAMK 12 301 - -
Vvi13g1033 520 Gene3D - 346 513 - -
Vvi13g1033 520 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 345 514 - -
Vvi13g1033 520 CDD EFh 403 462 IPR002048 GO:0005509
Vvi13g1033 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 8 479 - -
Vvi13g1033 520 SMART serkin_6 12 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1033 520 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Vvi13g1033 520 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Vvi13g1033 520 CDD EFh 437 504 IPR002048 GO:0005509
Vvi13g1033 520 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Vvi13g1033 520 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 125 - -
Vvi13g1033 520 SUPERFAMILY Protein kinase-like (PK-like) 4 322 IPR011009 -
Vvi13g1033 520 Gene3D Phosphorylase Kinase; domain 1 14 129 - -
Vvi13g1033 520 ProSiteProfiles Protein kinase domain profile. 12 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1033 520 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Vvi13g1033 520 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 129 319 - -
Vvi13g1033 520 SUPERFAMILY EF-hand 347 508 IPR011992 -
Vvi13g1033 520 SMART efh_1 400 428 IPR002048 GO:0005509
Vvi13g1033 520 SMART efh_1 478 506 IPR002048 GO:0005509
Vvi13g1033 520 SMART efh_1 436 464 IPR002048 GO:0005509
Vvi13g1033 520 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Vvi13g1033 520 Pfam EF hand 404 420 IPR002048 GO:0005509
Vvi13g1033 520 Gene3D Transferase(Phosphotransferase) domain 1 130 345 - -
Vvi13g1033 520 Pfam EF-hand domain pair 435 504 IPR002048 GO:0005509
Vvi13g1033 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1033 Vvi-Chr13 15965879 15968927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1033 83 507 EF-hand Containing Proteins AT3G10660 37.300 1.22e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Vvi13g1033 Pkinase 3.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1033 K13412 - vvi:100250591 1018.07