Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1031 ATGCTACCAATGTCTTCCTTCAAGGCCTACGGGAAAGTCAATGAAGCCGAACAAGAGAGGCTCTTGGCTCGTCGGAAAACCAGAAGAAGAATTACCATCATAAGCTTATCCTCAATCATCCTCGTTGCTGTTATAGTGGCTGCTGTTGTTGGCACTACTACCAATTCAGGGGGGAAGTCCAAGAATGCTGGAAATTCGGTTTCTACTTCCATCAAAGCGGTATGTGATGTTACCCTCTATCCAGACTCATGTTATAATAGTCTTGCACCTATGGTTAAGTCAAGCCAGCTTAAACCTGAAGATCTCTTCAACATGTCCATGGAAGTGGCCTTGAATGAGCTGCACAGAACTTTTCAGCGCTTCTCCGAGCATGAAGGCTTCAAGGGCATCACTGACAAAATGTTGGCTGGGGCTCTCGACGATTGTTATGAGCTTCTTGACCTAGCTATTGATAATCTCAACAGCTCACTGTCCTCTAGCTTGGACAATTTCGATGATCTCAAGACATGGTTAAGTGCTGCAGGTACTTACCAAGAGACTTGCATAAATGGCTTTGAGTCTGGAAATTTAAGGAGTAGTGTTCTTGAGTTCCTGAAGAACTCCACCGAGTTCTCTAGCAATAGCCTTGCCATCATCACCGAGATATCGAAGCTCGCAGGCTCCATCAGTTCCCGGCGATTAATGGGTTTGCCTGAGGATAAAGTTCCAAAATGGTTATCTGCAAAAGATCGGAAGCTACTTCAAAGTTCAAGTACTTTGAAAAAGAAGGCTGATGCTGTAGTCGCAACAGATGGCTCAGGGAAGTACAAGACAATTAGTGAAGCCCTGAAGGCTGTCCCTGATAAGAGCAAGAAGAGCTTTGTAATCTATGTCAAGAAAGGGGTTTACAATGAAAATGTAAGGGTCGAGAAGTCGAAATGGAATGTTTTGATGATAGGTGATGGAATGAATAAAACGGTGGTATCAGGTAAACTGAACTTTGTTGATGGAACTCCAACATTCTCAACAGCAACATTTGCCGTATTTGGAAAAGGATTTGTTGCAAGAGAAATGGGATTTCGAAACACTGCTGGTGCAATCAAGCACCAGGCCGTAGCGCTGATGTCAAGTGCCGACCAGACCGTGTTTTACCGCTGTCTCATAGATGCCTTTCAGGACTCTCTCTACGCCCATTCCCACCGCCAATTCTACCGTGAGTGTGACATCTATGGAACAGTAGATTTCATCTTTGGAAATTCAGCAGTTGTGTTCCAAAACTGCAACATACTGCCCAAGCAACCCATGCCTGGCCAGCAGAACACTATCACAGCGCAAGGGAAGAATGACCCTAACCAAAATACAGGGATTGCTATACAGAATTGCACCATTCTACCGTCAGCAGACTTGAGCTCTGTCAAGACTTACCTTGGACGGCCTTGGAAGAATTACTCAACAACTGTATACATGCATTCAATGATGGGGAGCTTGATTGACCCAGCGGGCTGGTTACCATGGACAGGCACAACAGCCCCAAACACCATTTTTTACTCTGAATTTCAGAATTTCGGACCTGGTTCCTCCACGAAGAATAGAGTTAAGTGGAAGGGATTGAGAAATATCACCCAGAAAGAAGCTAGTAAATTTACAGTCAAGTCATTCATTGATGGGAGCAAGTGGATCTCGGATGCTGGTGTTAGCTTCAAACCCGGGCTGTGA 1695 0.449 MLPMSSFKAYGKVNEAEQERLLARRKTRRRITIISLSSIILVAVIVAAVVGTTTNSGGKSKNAGNSVSTSIKAVCDVTLYPDSCYNSLAPMVKSSQLKPEDLFNMSMEVALNELHRTFQRFSEHEGFKGITDKMLAGALDDCYELLDLAIDNLNSSLSSSLDNFDDLKTWLSAAGTYQETCINGFESGNLRSSVLEFLKNSTEFSSNSLAIITEISKLAGSISSRRLMGLPEDKVPKWLSAKDRKLLQSSSTLKKKADAVVATDGSGKYKTISEALKAVPDKSKKSFVIYVKKGVYNENVRVEKSKWNVLMIGDGMNKTVVSGKLNFVDGTPTFSTATFAVFGKGFVAREMGFRNTAGAIKHQAVALMSSADQTVFYRCLIDAFQDSLYAHSHRQFYRECDIYGTVDFIFGNSAVVFQNCNILPKQPMPGQQNTITAQGKNDPNQNTGIAIQNCTILPSADLSSVKTYLGRPWKNYSTTVYMHSMMGSLIDPAGWLPWTGTTAPNTIFYSEFQNFGPGSSTKNRVKWKGLRNITQKEASKFTVKSFIDGSKWISDAGVSFKPGL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1031 564 PANTHER PECTINESTERASE 38 554 - -
Vvi13g1031 564 FunFam Pectinesterase 67 216 - -
Vvi13g1031 564 FunFam Pectinesterase 252 564 - -
Vvi13g1031 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 215 IPR035513 -
Vvi13g1031 564 CDD PMEI-like_3 73 217 - -
Vvi13g1031 564 SMART PMEI_2 66 211 IPR006501 GO:0004857
Vvi13g1031 564 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Vvi13g1031 564 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Vvi13g1031 564 Pfam Pectinesterase 258 549 IPR000070 GO:0030599|GO:0042545
Vvi13g1031 564 Pfam Plant invertase/pectin methylesterase inhibitor 70 211 IPR006501 GO:0004857
Vvi13g1031 564 Gene3D - 252 564 IPR012334 -
Vvi13g1031 564 SUPERFAMILY Pectin lyase-like 256 562 IPR011050 -
Vvi13g1031 564 NCBIfam pectinesterase inhibitor domain 37 215 IPR006501 GO:0004857
Vvi13g1031 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 216 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1031 Vvi-Chr13 15912641 15914430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1031 9 560 Carbohydrate Esterase AT5G04960 56.915 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1031 - - vvi:100267782 1032.32