Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1030 ATGCAACTCTATCTCTTTCTCTTCATCTTGTTCTTCACTTTCCTTTCTTTCTCACCGGCTCTCCTCATTTCGGGCCAAGCTCCGCCGCTCACCCCTTCCGCTGCATGCAAAGCCACACTCTATCCCAAGCTCTGTCGATCCATTCTCTCTACTTTCCGGTCATCGCCGGTCCGTCCTGACGCCTACGGTCAGTTCTCTGTGAAGCAGTGCCTGAAACAAGCTAGGAGAATGTCGGAGCTCATCGGCCACTACCTGACCCATAATCAGCGGTGGCCAATGAGCCACGCGGAGGCCGGAGCTCTGGACGACTGCCGGCAGCTGTCGGAGCTGAATGTGGACTATTTGCAGACGATTTCTGGGGAGTTGAAGTCAGCCGAGCTGATGACAGATGAGCTGGTGGAGCGCGTCAGAACTCTGCTTAGCGGGATCGTCACGAATCAGCAGACCTGTTACGACGGGCTCGTGGATTCTAGGAACTCGATGGTGGCTGCATTGTTAGCGCCGCTGTCCAATGCTAATCAGTTGTACAGTGTCTCACTGGGGTTGGTGAGTCGAGCACTAAGCCAGACTCGGAAGCGGCGCAAGAGACGTGGACTGACTGAGAACCGGTTCCTCAAGGAGTTGGACCGGGTTCGCGAACCGACTTCCAAGATCATCGAGGTTCTGAAGAAAGGGTCTTTGAATACATCAAGGGGGTCGTCGAGAGGAGGAAGGATTCTTGCTGAATTGGTGGATGGAGGGGTTCTGGTTAGCAATACTGTGACTGTGTCACCAAATGGTACCGACAACTTCACTACCATTGCAGATGCCATCTCATTTGCTCCCAACAGTTCCAATATTGAGGACGGCTACTTCGTAATCTATGTGAAAGAAGGATACTATGAGGAGTATCCCATGGTTCCCAAATATAAGAAGGGTATAATGCTGCTAGGAGACGGGATTAATCGCACTGTGATCACAGGAAACAGAAGTGTGGTTGATGGCTGGACCACCTTCAATTCTGCCACATTCGCTGTATCTGGAGAGAGATTTGTAGCCATAGACATAACATTCAGGAACACAGCCGGTCCAGAGAAGCACCAAGCGGTAGCCGTGAGGAACAATGCTGATCTCTCCACCTTCTACCGCTGCAGCTTTGAAGGATATCAAGACACACTCTATGCACATTCTCTAAGGCAATTCTACAGGGACTGCATCGTATATGGAACTGTAGATTTCATCTTTGGGAACTCTGCTTGCATCTTTCAGAACTGCAACTTGTATGCTCGAAAGCCCATGCCCAATCAGAAAAACGCCTTCACAGCCCAGGGGCGGATGGATCCAAATCAGAACACTGGCATCTCCATTCACAACTGCACCATTGAAGCTGCCCCTGACTTAGCCATGGACTTGAACTCCACCTTGAATTATCTGGGTCGTCCATGGAAGCAGTACTCCAGGACTGTGTACATGCAGTCCTATATTGGCAGCCTCATCGATCCAGTGGGATGGCTGGAATGGAATGGAACAGTGGGATTGGACACCCTTTACTATGGAGAGTTCGAGAATTATGGGCCAGGTGCAAATACTAGTATGAGAGTGCAATGGCCTGGTTATACTCTGATGAATGCTTCACAAGCTGTGAATTTTACTGTATATAATTTCACAATGGGAGATACTTGGTTGACTAACCTTGATATACCCTTCTATGGGGGATTACTATAG 1704 0.4971 MQLYLFLFILFFTFLSFSPALLISGQAPPLTPSAACKATLYPKLCRSILSTFRSSPVRPDAYGQFSVKQCLKQARRMSELIGHYLTHNQRWPMSHAEAGALDDCRQLSELNVDYLQTISGELKSAELMTDELVERVRTLLSGIVTNQQTCYDGLVDSRNSMVAALLAPLSNANQLYSVSLGLVSRALSQTRKRRKRRGLTENRFLKELDRVREPTSKIIEVLKKGSLNTSRGSSRGGRILAELVDGGVLVSNTVTVSPNGTDNFTTIADAISFAPNSSNIEDGYFVIYVKEGYYEEYPMVPKYKKGIMLLGDGINRTVITGNRSVVDGWTTFNSATFAVSGERFVAIDITFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYAHSLRQFYRDCIVYGTVDFIFGNSACIFQNCNLYARKPMPNQKNAFTAQGRMDPNQNTGISIHNCTIEAAPDLAMDLNSTLNYLGRPWKQYSRTVYMQSYIGSLIDPVGWLEWNGTVGLDTLYYGEFENYGPGANTSMRVQWPGYTLMNASQAVNFTVYNFTMGDTWLTNLDIPFYGGLL* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1030 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 186 IPR035513 -
Vvi13g1030 567 FunFam Pectinesterase 248 566 - -
Vvi13g1030 567 PANTHER PECTINESTERASE 15 556 - -
Vvi13g1030 567 NCBIfam pectinesterase inhibitor domain 3 178 IPR006501 GO:0004857
Vvi13g1030 567 Gene3D - 248 566 IPR012334 -
Vvi13g1030 567 SMART PMEI_2 27 182 IPR006501 GO:0004857
Vvi13g1030 567 Pfam Pectinesterase 254 552 IPR000070 GO:0030599|GO:0042545
Vvi13g1030 567 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Vvi13g1030 567 Pfam Plant invertase/pectin methylesterase inhibitor 33 181 IPR006501 GO:0004857
Vvi13g1030 567 SUPERFAMILY Pectin lyase-like 249 564 IPR011050 -
Vvi13g1030 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 185 IPR035513 -
Vvi13g1030 567 CDD PMEI-like_3 34 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1030 Vvi-Chr13 15881966 15885264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1030 9 567 Carbohydrate Esterase AT3G10720 57.072 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1030 K01051 - vvi:100262623 1133.63