Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1022 ATGGATGGAGGGTCAGGCCATGGCTTTGTGCCTCCTTCGGCTTCTTTTGATAAATCTCGAGTTTTGGATATCAAGCCTTTGCGGAGTTTGGTTCCGGTGTTCCCTAATCCGCCCCAAGCGCCCCCGTTTGTGTGTTCACCGCCCTTTGGGCCGTTCCCACCTGGGTTTACTCCATTTTATCCATTTAGCGTGGCGCAAGGGCCTCAGAGTTCACCTGAGTTGAACCAACACAAAACCCCAACTGGGGCTACCAATCATGAAACCCCAATATCAGCTTCTGCTAATTTGTTTAGGACTCCGCCCCATTTTCCTGGGGTGGTGAATGGAGATGCGGAAACCTCCAGAGAATATGGTGTGCAATTTCTAAATGAAAATTCGAATATGGGGGTAAAACAGGATGGGTTCTTTGATGACCCAAAGCGAGCAGCTCCTCATTTGCGCGCCTCCAATTCCTCTCGGAAGAAGGCTAAGAAAAGCAAAGATGTGGATATTTCTTTAACAGTTGATAATGAGAAAGGATCAAGTAAGAATTTTGTTATGAGATTTGACTCACTTCAATTGGATGATGGTAACAGGGAAATGGTGAATTATGTACTTATGACATTTGATGCACTTCGAAGAAGACTTAGTCAAATTGAAGAGGCTAAGGAATCACCTGGTGGAGGTATTAAACGTGCAGATTTAAAAGCTGCCAATATTTTGATGAGCAAAGGGGTTCGGACAAACATGAGGAAGAGAATTGGAGTTACTCCTGGTGTTGAGGTTGGTGACATTTTCTTTTTCCGGATGGAGATGTGTTTGGCTGGATTACATGCTCAATCTATGGCTGGGATTGACTACATGTTTGTCAAGGGTGGTTTAGAAGAAGAGCCAGTGGCTGTAAGCATTGTCTCGTCAGGAGGATATGATGATGATGCAGATGATGCCGATGTTTTGATCTATAGTGGCCAGGGTGGTAATGTAAACAGGAAAGATAAGCAAGTGGCTGATCAGAAGCTAGAAAGGGGCAATCTTGCTTTGGATAGAAGCTTTCACCGAGCCAATGAAGTAAGAGTTATCCGAGGGGTGAAAGATGTAGTTAATCCATTGTCAAAGGTCTATGTCTATGATGGTCTTTATACAATCCAGGAGTCATGGACAGAGAAAGGGAAGTCTGGTTGCAATATGTTCAAATATAAATTGGTCAGAATACCTGGGCAGCCTGGTGCTTTTGCTCATTGGAAATCAATTCAGAAATGGAAGGAAGGTTTCTCTTCAAGGATTGGACTTATTCTTCCAGACCTGACATCTGGGGCAGAAAGTATACCAGTTTCACTTGTAAATGATGTTGATGATGAGAAGGGACCTGCTCATTTCACTTACTTTCCTACTCTCAGGTATTCAAAATCATTTAACTTAAAACACCCTTCTTTTGGTTGCAACTGCCAGAACGCATGCCTCCCTGGTGATCTCAACTGCTCTTGCATTCGGAAAAATGGTGGTGATTTTCCATATACCTCCAATGGGATTCTAGTTGCCAGGAGGCCATTAGTACATGAGTGTGGTCCCACATGCCCATGCATTCCTAACTGCAAGAACCGAATGTCCCAGACTGGTTTGAAAGTACGCCTAGAAGTGTTCAAAACCAATAATAGAGGTTGGGGTCTCCGGTCATGGGATCCAATCCGCACTGGTACTTTTATTTGTGAATATGCAGGTGAAGTCTTGGACAAGGTTAAGGTTTATCAAGAGAGGGATGAAGGTGAAAGCAATGAGTACCTCTTTGATACAACCCATGTTTATGACAATGCTTTCAAATGGAATCATGAGCCTGGGTTACTGGATGAGGAGCCATCTGCTGAGCCTAATGAGTATTATGATATCCCATCTCCTCTAATTATAAGTGCAAAATATGTTGGAAATGTAGCTCGATTTATGAATCATAGCTGCTCTCCTAATGTCTTTTGGCAGCCGGTTCTATATGAACACAACAATGAATCCTTTCTCCATATTGCATTTTTTGCAATCAAACACATTCCTCCTATGACAGAGTTGACATATGATTATGGGATGTTGCAATCTGAAAATTATGAGGTCCAGAGTAACCATACTCCAAATGGGAAGAAAAAATGCTTATGTGGATCGTCAAACTGCAGGGGCTATTATGGTTGA 2151 0.4291 MDGGSGHGFVPPSASFDKSRVLDIKPLRSLVPVFPNPPQAPPFVCSPPFGPFPPGFTPFYPFSVAQGPQSSPELNQHKTPTGATNHETPISASANLFRTPPHFPGVVNGDAETSREYGVQFLNENSNMGVKQDGFFDDPKRAAPHLRASNSSRKKAKKSKDVDISLTVDNEKGSSKNFVMRFDSLQLDDGNREMVNYVLMTFDALRRRLSQIEEAKESPGGGIKRADLKAANILMSKGVRTNMRKRIGVTPGVEVGDIFFFRMEMCLAGLHAQSMAGIDYMFVKGGLEEEPVAVSIVSSGGYDDDADDADVLIYSGQGGNVNRKDKQVADQKLERGNLALDRSFHRANEVRVIRGVKDVVNPLSKVYVYDGLYTIQESWTEKGKSGCNMFKYKLVRIPGQPGAFAHWKSIQKWKEGFSSRIGLILPDLTSGAESIPVSLVNDVDDEKGPAHFTYFPTLRYSKSFNLKHPSFGCNCQNACLPGDLNCSCIRKNGGDFPYTSNGILVARRPLVHECGPTCPCIPNCKNRMSQTGLKVRLEVFKTNNRGWGLRSWDPIRTGTFICEYAGEVLDKVKVYQERDEGESNEYLFDTTHVYDNAFKWNHEPGLLDEEPSAEPNEYYDIPSPLIISAKYVGNVARFMNHSCSPNVFWQPVLYEHNNESFLHIAFFAIKHIPPMTELTYDYGMLQSENYEVQSNHTPNGKKKCLCGSSNCRGYYG* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1022 716 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 95 710 - -
Vvi13g1022 716 Gene3D - 230 418 IPR036987 -
Vvi13g1022 716 Pfam SAD/SRA domain 247 400 IPR003105 -
Vvi13g1022 716 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 231 415 - -
Vvi13g1022 716 SMART preset_2 425 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi13g1022 716 ProSiteProfiles Pre-SET domain profile. 471 532 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi13g1022 716 ProSiteProfiles Post-SET domain profile. 700 716 IPR003616 -
Vvi13g1022 716 Pfam Pre-SET motif 429 527 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi13g1022 716 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 111 716 IPR025794 GO:0016571
Vvi13g1022 716 ProSiteProfiles YDG domain profile. 248 396 IPR003105 -
Vvi13g1022 716 SUPERFAMILY SET domain 434 713 IPR046341 -
Vvi13g1022 716 SUPERFAMILY PUA domain-like 229 418 IPR015947 -
Vvi13g1022 716 Gene3D SET domain 419 715 IPR046341 -
Vvi13g1022 716 MobiDBLite consensus disorder prediction 133 162 - -
Vvi13g1022 716 Pfam SET domain 546 683 IPR001214 GO:0005515
Vvi13g1022 716 ProSiteProfiles SET domain profile. 535 683 IPR001214 GO:0005515
Vvi13g1022 716 SMART set_7 535 689 IPR001214 GO:0005515
Vvi13g1022 716 SMART G9a_1 243 400 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1022 Vvi-Chr13 15529271 15531421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1022 1 716 Su(var)3-9 homologs AT1G73100 54.888 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi13g1022 SAD_SRA 6.4e-52 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1022 K24405 - vvi:100262508 1429.85