Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1007 ATGTTGAAATTTGATGTTACAAAAAAGTGCCTTGTTGGAGAGGGCTGGTGCCCAATATTTGCAAAAGCTCAGATTCAGGAGGCTCTGCAACATGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATATCATGTGATGGATGCTGTGGAACCACCTCCAACATATTTTAGAACCAACCGCTTCACAAATGCATTTCAGGAAATTGTTGATGCATATGGGATAAGCTTTGCCTTTTTCGAACTCTCTCAAAATGAAGATGTCTATTTTGTTTGGGGTGACCCAGATGAACATAGGAATTGTATTTACTTGAATGCACATTTCTTTGGTAGCTCATTGGATATAAGGTTTCAGTTTGTGCTACAAATGATATTTCTCAACAGGCTTTTTGGGTATCTATTGCTTCTCATTATCATAAAATGGTGCACTGGTTCTCAATCTGATCTCTATCATAGACCACTCCAACTCATACAGTTGCTCGTCTCTTATTGCAGTTCCATGGATGCCCTTTCCAAAACCTTTTATTTTGAAGCAGCTTCATTTGGAGGGGTTTCAAGGTCGTACCTATGGGATACTTGA 579 0.3921 MLKFDVTKKCLVGEGWCPIFAKAQIQEALQHATFDSNSQVGIIYHVMDAVEPPPTYFRTNRFTNAFQEIVDAYGISFAFFELSQNEDVYFVWGDPDEHRNCIYLNAHFFGSSLDIRFQFVLQMIFLNRLFGYLLLLIIIKWCTGSQSDLYHRPLQLIQLLVSYCSSMDALSKTFYFEAASFGGVSRSYLWDT* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1007 192 PANTHER VACUOLAR PROTON ATPASES 1 75 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vvi13g1007 192 Pfam V-type ATPase 116kDa subunit family 1 76 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vvi13g1007 192 Pfam V-type ATPase 116kDa subunit family 103 175 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1007 Vvi-Chr13 15209760 15215178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1007 1 76 Primary Pumps ATPases(2) AT2G28520 78.947 8.21e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1007 K02154 - vvi:100250193 149.828