Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1006 ATGGAGGTGAGTATAATAACATTGTCATCCGGATGGTGGGGCTTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTGCTCATGATGGAGACACTTGGTGCTTTCCTCCATGCCTTGCGTCTCCATTGGGTGGAATTCCAAAGTGTTACCATGGTGGCTACAAATTCAGGCCTTTCTCCTTTGCTTCATTAA 192 0.4531 MEVSIITLSSGWWGLAVFAFATAFILLMMETLGAFLHALRLHWVEFQSVTMVATNSGLSPLLH* 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1006 63 PANTHER VACUOLAR PROTON ATPASES 13 48 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vvi13g1006 63 Pfam V-type ATPase 116kDa subunit family 12 48 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1006 Vvi-Chr13 15206612 15209463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1006 14 46 Primary Pumps ATPases(2) AT2G28520 93.939 4.97e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1006 K02154 K17616 vvi:100267967 121.709