Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1002 ATGGGGAGCAAAACTAAGACGTTCTCGGAGCTTTTGGCGGAGCGACAGGCGGAGCGACAGGCGTCGGCCGGCGAGGTTGCGTCTCTGTCAAAGGACTCTGAGACGGAGCAGGAAATTTTGGCTGAATTTGCATCTCTGGTTGCGAAGTTCGGACCGATTCTCGATGATTTGAGGGAGAACAAGGTCATGGACACGCCTTCGATTCGAGAAGCGGTGGAGTCGCTGGAGAAAGAGCTTGGTCGAGCTAGGGGTTTGATGAAAAGCCCTAACCCCAAAATATCGGTTAAGCAAATCGAGGAATTGACTCGAGGTCTGGGGCGATCTCTGGGCCTGGTTCTGTCTGCTAGTCTTGATTTTTTGTCAGTAGATGTTAAAGAAAAGATTGGAGCATTGCATAAGGAAATGATGAAGGCAAAATTTGATACGAGCTCCATCCCCGACCGCGAAGAATCTGAGTTTGATCGCGAAACAGAATTTGTAAATGAGTTCGGAGTAGAAGACGAGATAGTGGAGGAGATGAATGCAAAATTTGATACGAGCTCGAGCCCCGACCGCGAAGAATCTGAGTTTGATCGCGAAACAGAATTTGTAAATGAGTTCGGAGTAGAAGACGAGATAGCGGAGGAGGTGGCGGAGGTGGAGGAGATAGAAGAGATAGAGGAGGAGATTATCAATCTTGACATCGATGATGTTGTGCTACAATTGAAGTATGGTAATGATGAAGAATTCAAATTCGCACTTTCGGGATTGAGGTCACTCATTAGGGACCAAATGGTGGATGATGAATGGATTAACGATGAAGGGGTTGTTCTAATCCTATCCAATAGATTGGGTTCGAGCAAGCCAAACAATAGGTTGACTATAATTCAAATGCTGCGCAACCTTGTGGAGAATGCTAAAAACAAGGAGAAGTTGGCAGACCCAAATTCATTGTCAACCATTGTGAAATATTTGACTCGGGATGTCGAGGAACGGAGGGAGGCTGTGGGGCTGTTGCTTGACCTCTCAGACCTTCCTGCAGTTCATAGGCGGATTGGTAGAATTCAAGGGTGTATTGTCATGTTGGTTGCGATTCTTAATGGAGAAGATTCAGTTGCTTCACGTGATGCAGGGAAGTTGTTAAGCGCATTATCTAGTAATACTCAGAATGCTCTTCATATGGCTGAGGCTGGGTACTTTAAGCCATTAGTGCATTACTTAAAGGAAGGTTCTGACATGAGTAAAATTCTCATGGCAACAGCACTTTCAAGAATGGAGCTCACAGATCAAAGCAGAGGTTCCCTTGGCAAAGATGGGGCAATTGAACCCCTTGTGAAAATGTTTAATGCTGGGAAGCTTGAATCCAAGTTATCTGCTTTAAGCGCATTGCAAAATTTGTCCATGTTGACTGAGAACATCCAACGTTTGATCAGTTCAGGGATCGTAGTTGCTTTGCTTCAGCTCCTTTTCTCTGTCACATCTGTGCTCATGACACTTCGGGAGCCAGCATCTGCTATTCTGGCAAGGATAGCTCAGTCCGAATCTATTCTTGTCAACCAAGATGTGGCTCAACAAATGCTCTCACTTCTAAACCTTTCCAGTCCTGTAATTCAATATCACCTCTTACAGGCACTGAATAGCATCTCTGCTCATTCCAGTGCGTCCAAAGTCAGAAATAAAATGAAGGAAAATGGTGCGATTCAGCTTCTCCTCCCCTTCCTGAGTGAAACCAACACTAAGACCAGAACTGGTGCTTTGAATTTACTATACACTCTCTCCAAATATTTACCAGCAGAGTTCACAGAGCAGCTCAGTGAGACCCATCTCAATATTATTGTAAATATTATCTCATTATCAACATCTGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGCAATCTCCCAGTTAATAACAAAAAAGCGACAGATACTCTTAAGAGGGCAAATTTGTTGCCAATTTTGGTCTCCATAATGAGTTCCTTCCCTGCAACTTCAACCCCCACAACCTGCTGGTTAGTGGAGAGCATTGCAGGTGTATTCATTCGGTTTACAGTTCCTTCTGATAAGAAATTGCAACTTTTTTCAGCAGAACATGGAGTAATACCTTTGCTTGTGAAGTTGCTTTCTAGTGGATCGCCAGTTGCTAAATGTAGAGCTGCAACTTCACTAGCTCAGCTGTCACAGAATTCATTATCTCTTCAGAAGTCCAGATCATCGAGATGGTTTTGTGTTCCTCCTTCTGTTGATGCATATTGTGAAATTCACGATGGTTTCTGCTTTGTCAAAAGTACATTTTGTTTACTCAAGGCAGGTGCTATTTCTCCCTTGGTCCAAATCTTGGAAGGTGATGAGAGAGAAGCAGATGAAGCTGCTCTCAGTGCTCTTGCAACTCTTGCCCTGGATGAAATTTGGGAACATGGAATCAATCACATTACCAAAATATCAGGCGCTCAGCCTATTATAAAGGTTTTGGAATTGGGGACTGTCAAAGCTCAAGAAAAGGCACTATGGATACTAGAGAGGATTTTTAGGGTTGAGGCTCACAGGGTACAGTATGGTGAATCTGCTCAGGTAGTGCTCATTGATCTGGCACAGAAGGGCGATCCCAAATTGAAATCAACAATTGCTAAGTTACTGGCACAACTTGAGCTCTTGCAAGCCCAATCTAGTTACTTTTGA 2661 0.4401 MGSKTKTFSELLAERQAERQASAGEVASLSKDSETEQEILAEFASLVAKFGPILDDLRENKVMDTPSIREAVESLEKELGRARGLMKSPNPKISVKQIEELTRGLGRSLGLVLSASLDFLSVDVKEKIGALHKEMMKAKFDTSSIPDREESEFDRETEFVNEFGVEDEIVEEMNAKFDTSSSPDREESEFDRETEFVNEFGVEDEIAEEVAEVEEIEEIEEEIINLDIDDVVLQLKYGNDEEFKFALSGLRSLIRDQMVDDEWINDEGVVLILSNRLGSSKPNNRLTIIQMLRNLVENAKNKEKLADPNSLSTIVKYLTRDVEERREAVGLLLDLSDLPAVHRRIGRIQGCIVMLVAILNGEDSVASRDAGKLLSALSSNTQNALHMAEAGYFKPLVHYLKEGSDMSKILMATALSRMELTDQSRGSLGKDGAIEPLVKMFNAGKLESKLSALSALQNLSMLTENIQRLISSGIVVALLQLLFSVTSVLMTLREPASAILARIAQSESILVNQDVAQQMLSLLNLSSPVIQYHLLQALNSISAHSSASKVRNKMKENGAIQLLLPFLSETNTKTRTGALNLLYTLSKYLPAEFTEQLSETHLNIIVNIISLSTSDSEKAAAVGILSNLPVNNKKATDTLKRANLLPILVSIMSSFPATSTPTTCWLVESIAGVFIRFTVPSDKKLQLFSAEHGVIPLLVKLLSSGSPVAKCRAATSLAQLSQNSLSLQKSRSSRWFCVPPSVDAYCEIHDGFCFVKSTFCLLKAGAISPLVQILEGDEREADEAALSALATLALDEIWEHGINHITKISGAQPIIKVLELGTVKAQEKALWILERIFRVEAHRVQYGESAQVVLIDLAQKGDPKLKSTIAKLLAQLELLQAQSSYF* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1002 886 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Vvi13g1002 886 SUPERFAMILY ARM repeat 227 482 IPR016024 -
Vvi13g1002 886 Coils Coil 202 222 - -
Vvi13g1002 886 SMART arm_5 682 722 IPR000225 GO:0005515
Vvi13g1002 886 SMART arm_5 462 505 IPR000225 GO:0005515
Vvi13g1002 886 SMART arm_5 380 420 IPR000225 GO:0005515
Vvi13g1002 886 SMART arm_5 298 337 IPR000225 GO:0005515
Vvi13g1002 886 SMART arm_5 631 672 IPR000225 GO:0005515
Vvi13g1002 886 SMART arm_5 547 587 IPR000225 GO:0005515
Vvi13g1002 886 SMART arm_5 421 461 IPR000225 GO:0005515
Vvi13g1002 886 SMART arm_5 754 794 IPR000225 GO:0005515
Vvi13g1002 886 Gene3D - 213 423 IPR011989 -
Vvi13g1002 886 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 226 886 - -
Vvi13g1002 886 Gene3D - 424 734 IPR011989 -
Vvi13g1002 886 SUPERFAMILY ARM repeat 426 840 IPR016024 -
Vvi13g1002 886 Gene3D - 749 882 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1002 Vvi-Chr13 15119429 15122983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1002 226 886 U-box Gene Family AT1G76390 28.107 3.13e-46 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1002 K08332 - vvi:100264457 1560.81