Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1001 ATGGAATCCCAGAAGCCGCCAAATGCTGAACCTGCTAAGAGATCATCATCAATTCCAAATCGACTCCCAATGGCAAGACGTGGACTTGGGAGAACCGGCGAAACTATACAACTTGTAACCAACCATTTCAAAGTTTCCATGCACTCCAATGCGAACACTGGTGCCCACTTCTACCAATATAATGTATCTCTGGCTCATGAAGATGGGCACCCGGCTGATGCCAAAGATATTGGCAGAAAAGTTATGGACAAAGTTCATGAGACTTATCACACTGAGATGGCTGGTATGAGCTTTGCCTATGATGGCGAGAAGAGTTTGTTTACAATTGGCTCTCTTCCAAGCAAAAAGCTCCGATTCACGGTTGTCTTGGAGGATGCATCATCAAATAGGTATAAATGCACATTAAACATAGACAGCCCTGATGATGGGAGTGACCGAAAAAGATCAAGGCGTCCCTACCATTCCAAAACATTCAATGTGGAGATTAGTTTTGCAGCCAAATTCCCAATGGATTCCATTGTAAGGGCATCATACGGCCAGCCATCAAAGCACCTCCAGGACGCCGCTCGGGTTTTAGACATCATACTAAGGCAGCATGCAGCAAAGAAGGGCTGCCTTGTTGTCCGACAGTCATTTTTTGACAATCTACCTAGGAATTTCACACCTTTGGGAGGTGGTGTTCTTGGATGTCGAGGTTTCAATTCAAGCTTCAGAGCTACTCAAGGGGGTCTATTCTTGAATATGGATGTCTCTACCACACTGGTCATACAGCCTGATCCAGTGAGAGATTTTCTCGTCTCTAATCAAAATGTTAAAGACATGTATCACATTGACTGGAGCAAGGCCAAAAGGATGCTAAAAAATCTGAGGGTCAAAACTTTACACTCCAATGCAGAGTGGAAAATCAGTGGATTGAGTGAGAGGACCTGCAGAAATCAAACCTTCTTAATGAAACAAAGAAATGAAGGGCCGGATGGGGATGAAGTCCGAAGTGTTGAAGTAACAGTTTATGACTATTTTGTCAAACATCGAAAAATAAGTTTACAGTATTCTGGGGATTTTCCATGCATCAACGTTGGGAGATCAAAGCACCCCGTCTATATTCCTCTCGAGCTTTGCACATTGGTTTCCTTGCAACGCTATACCAAGCCATTGTCTACTCAGCAGAGATCTTCACTTGTGGAGAAATCACGACAAAAGCCTCAAGAACGGATGCGAGCATTAAAAAGCAACAAGTATGATGCAAACCCAATGCTCCGTTCTTCTGGAATTTCAATTAGTACTCAATTTACACAAGTTGAAGGCCGTATCTTGCCGACTCCAAGTTTGAAATCAGGCAATGGGCAGGACTTGTCACCTCGAAACGGAAGGTGGAACTTCAACAATAAGGAACTAGCTCAACCAACAAAGATTGACCCTTGGCTTATTGCAAGCTTCTCATCACGCTGTAATATGAAAACACTGATTCAGGATCTCATTAAGTGTGCAAAAATGAAAGGAATTTCCATGGGATATCCGGCTGAAATTTTTACAGAGAATCCTCAATATATGCGACAACCAGCTCCTGTTAGAGTGGACAAGATGATTGGCACTATGATGTCACAATTCAGACGTTTGCCCCAGTTTATTCTTTGTATTCTTCCACAGAAGAAGAACTGCGACATCTATGGTCCATGGAAACGGCAATGCCTTTCAGGTTGTGGAGTTCCCATACAGTGCATTGCACCATCTACACCAGTAGTGAATGATCAATACCTCACTAATGTGTTGTTAAAAATCAATGCCAAGCTTGGGGGTTTGAATTCTTTGTTAACTATGGGATATTGTCCATCCCTTCATTTGATTTCAACGATACCCACTTTAATCCTTGGAATGGATGTGTCCCATGGCTCTCCTGGTCGGCCTGATGTGCCGTCTATTGCTGCGGTGGTAAGTTCCAGGCATTGGCCATCGATTTCTCAATATAGAGCTACAGTCCGTACACAGTCTCCCAAACTTGAGATGATAGATTCTCTATTCGAGCCTCTGCCTAATTCCAAAGATAGTGGCATAATCAGGGGCACCCTGTTGGACTTCTATAAAACTTCAGCAAAAAGGAAGCCTGAACACATAATCATTTTCAGGGATGGAGTCGGTGAATCGCAATTCAACCAAGTCTTGAACATTGAACTGGAACAAATAATTGAGGCCTGCAAACTCCTGGATGAGCAATGGCATCCAAAGTTCATGGTGATTATTGCACAGAAGAATCACCATATAAGATTCTTCCAGAATGGATCCCCGTCTAATGTTCCTCCCGGGACAATCGTGGACAACACAATATGTCATCCAAGAAACAATGATTTCTATTTGTGTGCACATGCTGGGATGATTGGGACAAGCCGGCCTACGCATTACCATGTATTGCTGGATGAGCTTGGCTTTTCAGCAGATGACTTGCAGCAACTTGTGCATTCCTTGTGTTACGTATATCAGAGGAGCACCACGGCTGTATCTCTAGTGGCCCCAGTATGCTATGCTCACCTGGCTGCAGCCCAAGTTGCCCAGTTTATCAAGTTTGAGGACTTGCCGGAGTCATCCTCTGGTCATGCTGCTGCTCCAGTACCACAGTTGCCCTCCTTCCATGAGAAGGTCGCTGATACTATGTTCTTTTGCTAA 2658 0.4398 MESQKPPNAEPAKRSSSIPNRLPMARRGLGRTGETIQLVTNHFKVSMHSNANTGAHFYQYNVSLAHEDGHPADAKDIGRKVMDKVHETYHTEMAGMSFAYDGEKSLFTIGSLPSKKLRFTVVLEDASSNRYKCTLNIDSPDDGSDRKRSRRPYHSKTFNVEISFAAKFPMDSIVRASYGQPSKHLQDAARVLDIILRQHAAKKGCLVVRQSFFDNLPRNFTPLGGGVLGCRGFNSSFRATQGGLFLNMDVSTTLVIQPDPVRDFLVSNQNVKDMYHIDWSKAKRMLKNLRVKTLHSNAEWKISGLSERTCRNQTFLMKQRNEGPDGDEVRSVEVTVYDYFVKHRKISLQYSGDFPCINVGRSKHPVYIPLELCTLVSLQRYTKPLSTQQRSSLVEKSRQKPQERMRALKSNKYDANPMLRSSGISISTQFTQVEGRILPTPSLKSGNGQDLSPRNGRWNFNNKELAQPTKIDPWLIASFSSRCNMKTLIQDLIKCAKMKGISMGYPAEIFTENPQYMRQPAPVRVDKMIGTMMSQFRRLPQFILCILPQKKNCDIYGPWKRQCLSGCGVPIQCIAPSTPVVNDQYLTNVLLKINAKLGGLNSLLTMGYCPSLHLISTIPTLILGMDVSHGSPGRPDVPSIAAVVSSRHWPSISQYRATVRTQSPKLEMIDSLFEPLPNSKDSGIIRGTLLDFYKTSAKRKPEHIIIFRDGVGESQFNQVLNIELEQIIEACKLLDEQWHPKFMVIIAQKNHHIRFFQNGSPSNVPPGTIVDNTICHPRNNDFYLCAHAGMIGTSRPTHYHVLLDELGFSADDLQQLVHSLCYVYQRSTTAVSLVAPVCYAHLAAAQVAQFIKFEDLPESSSGHAAAPVPQLPSFHEKVADTMFFC* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1001 885 Pfam Argonaute linker 1 domain 208 256 IPR014811 -
Vvi13g1001 885 SUPERFAMILY Ribonuclease H-like 533 850 IPR012337 -
Vvi13g1001 885 Gene3D paz domain 252 381 - -
Vvi13g1001 885 MobiDBLite consensus disorder prediction 1 15 - -
Vvi13g1001 885 Pfam Piwi domain 542 852 IPR003165 GO:0003676
Vvi13g1001 885 CDD PAZ_argonaute_like 260 376 - -
Vvi13g1001 885 Coils Coil 717 737 - -
Vvi13g1001 885 ProSiteProfiles Piwi domain profile. 542 852 IPR003165 GO:0003676
Vvi13g1001 885 SUPERFAMILY PAZ domain 253 409 IPR036085 GO:0005515
Vvi13g1001 885 FunFam Protein argonaute 3 612 885 - -
Vvi13g1001 885 Gene3D - 613 885 IPR036397 GO:0003676
Vvi13g1001 885 FunFam Protein argonaute 7 253 381 - -
Vvi13g1001 885 Pfam PAZ domain 263 393 IPR003100 GO:0005515
Vvi13g1001 885 CDD Piwi_ago-like 417 851 IPR045246 -
Vvi13g1001 885 SMART DUF1785_2 206 258 IPR014811 -
Vvi13g1001 885 Pfam Argonaute linker 2 domain 407 444 IPR032472 -
Vvi13g1001 885 MobiDBLite consensus disorder prediction 1 31 - -
Vvi13g1001 885 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 21 854 - -
Vvi13g1001 885 ProSiteProfiles PAZ domain profile. 259 377 IPR003100 GO:0005515
Vvi13g1001 885 Gene3D - 437 605 - -
Vvi13g1001 885 SMART Piwi_a_2 542 852 IPR003165 GO:0003676
Vvi13g1001 885 Pfam N-terminal domain of argonaute 35 196 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1001 Vvi-Chr13 15074590 15079381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1001 26 885 Eukaryotic Initiation Factors Gene Family AT5G43810 33.223 4.83e-144 450