Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0999 ATGGGGATTCAGACTATGGGGTCTCAAGGTGGTGGTGGCGGTGGTGGTACTGGTAATGGTAAACAATCTCAGTTTCAGCCATTGGCACGGCAAAACTCAATGTATAGTTTAACACTTGATGAGGTTCAAAATCAGTTAGGAGACTTGGGGAAACCGCTGACTAGTATGAACCTTGATGAGCTTCTCAAGAATGTGTGGACGGTTGAGGCTAATAATTCTGTGGGTATGGATGCTGAGGGTGCAGGTTTGAGTAACCAATCTGCTCTGCAACGAGAGCCTAGCCTGTCATTGACAGGTGCTCTTAGCAAGAAGACAGTTGATGAGGTCTGGCGAGATATACAAGGGCATGGCAAGAACAGTGAAGAGAAGAAATCTCGGGAGAGGCAGCCTACTTTGGGGGAGATGACATTGGAGGATTTCCTGGTAAAGGCGGGAGTTGTCGCTGAACCATCAGATAAAAAGATTGCTGGTACTGTTATTGGGGTTGATCCTAATGTAGGGCCACAATTCCCACAGCAGGGTCAGTGGATGCAGTACCCACAACCACAATTTCCGCATCCGCAACAGAATATGATAGGGGTTTATATGCCAGGCCAGCCAATGCCGCAGCCGCTACCCATGGGACCTAGCTCTGTCATGGATGTGACATATCCTGACAACCAAGTGGCCTTATCTTCTCCATTGATGGGAGCTTTATCAGATACACAGGCACCTGGGAGGAAAAGAGTTTCCCAAGAGGATATGATTGAGAAAACTGTTGAGAGGAGACAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCAAGGGCCAGGAAGCAGGCTTACACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAAGAGGAAAATGAAAGGCTAAGGAAACGAAAGGTATGTATTTTCTTCTAA 915 0.4721 MGIQTMGSQGGGGGGGTGNGKQSQFQPLARQNSMYSLTLDEVQNQLGDLGKPLTSMNLDELLKNVWTVEANNSVGMDAEGAGLSNQSALQREPSLSLTGALSKKTVDEVWRDIQGHGKNSEEKKSRERQPTLGEMTLEDFLVKAGVVAEPSDKKIAGTVIGVDPNVGPQFPQQGQWMQYPQPQFPHPQQNMIGVYMPGQPMPQPLPMGPSSVMDVTYPDNQVALSSPLMGALSDTQAPGRKRVSQEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKVCIFF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0999 304 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 28 298 IPR043452 GO:0003700|GO:0045893
Vvi13g0999 304 SUPERFAMILY Leucine zipper domain 255 298 IPR046347 GO:0003700|GO:0006355
Vvi13g0999 304 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 258 273 IPR004827 GO:0003700|GO:0006355
Vvi13g0999 304 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 253 302 - -
Vvi13g0999 304 Coils Coil 271 298 - -
Vvi13g0999 304 MobiDBLite consensus disorder prediction 1 32 - -
Vvi13g0999 304 Pfam bZIP transcription factor 255 298 IPR004827 GO:0003700|GO:0006355
Vvi13g0999 304 Gene3D - 253 300 - -
Vvi13g0999 304 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 253 298 IPR004827 GO:0003700|GO:0006355
Vvi13g0999 304 SMART brlzneu 251 302 IPR004827 GO:0003700|GO:0006355
Vvi13g0999 304 CDD bZIP_plant_BZIP46 255 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0999 Vvi-Chr13 15049460 15050488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0999 18 299 bZIP Transcription Factor Family AT3G56850 54.983 8.53e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi13g0999 bZIP_1 2.5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0999 K14432 - vvi:100266389 521.161