Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0995 ATGGGTAATACTTGTGTTGGTCCAAGCATCTCCAAGAATGGTTTCTTCCAATCTGTGTCGGCTGCAATGTGGCGGAGCCGTGCACCGGAAGGCTCGGCTTCTTACACGAATGGAGAAACTATGGATGAGCCACAGGCTACAACTAAAGAACCCGGATCACCATTGCCAGTCCAAAACAAACCCCCAGAGCAAATGACAATCCCCAAGGAGGAGCAGCCTACAAAACCCAAGAAGCCCCATCAAATTAAGAGGGTGTCGAGTGCAGGGCTTAGGATAGAATCTGTGTTGCAAACAAAAACCGGAAACTTTAAGGAATTTTTTATTCTGGGGAGGAAGCTTGGACAAGGGCAATTTGGGACTACATTTCTTTGTGTGCAGAAAGCTACCAGGAAAGAGTATGCGTGTAAATCAATTGCGAAAAGGAAATTGTTAACAGATGAGGACGTGGAGGATGTCAGAAGGGAAATTCAGATAATGCACCACCTGGCAGGGCATCCAAATGTCATATCTATCGAGGGAGCTTATGAGGATGCTGTGGCAGTTCATGTTGTCATGGAACTATGCAAAGGTGGGGAGCTATTTGATAGGATTATTCAGCACGGCCATTACACTGAAAGAAAGGCAGCTGAGCTTACTAGGACTATAGTTGGGGTTGTGGAGGCTTGTCATTCTCTAGGGGTCATGCATCGAGACCTTAAGCCTGAGAACTTTCTTTTAGTCAATGAGGAGGAGGATTCACTTCTCAAAACAATTGACTTTGGATTATCAGTTTTCTTCAAGCCAGGGGAAAAATTTACTGATGTGGTTGGCAGCCCATACTATGTCGCACCAGAAGTTCTGAGAAAGCGTTATGGTCCAGAAGCAGATGTTTGGAGTGCTGGGGTGATCCTATACATTTTATTGAGTGGAGTGCCTCCCTTTTGGGCCGAAACCGAGCAAGGTATATTTGAACAGGTCTTGCATGGTGATCTTGACTTTTCATCAGACCCTTGGCCGAGTATCTCAGAAAGTGCCAAAGATTTAGTAAGGAGAATGCTTGTTCGAGACCCTAGACGGCGGTTGACTGCACATGAAGTTTTGTGTCACCCTTGGGTTCAGGTTGATGGTGTAGCTCCTGACAAGCCTCTTGATTCGGCAGTTTTAAGTCGCTTGAAACAATTTTCAGCAATGAACAAGCTCAAGAAGATGGCTCTTATTGTCATTGCAGAGAACCTATCAGAAGAAGAAATAGCTGGCTTAAAAGAAATGTTCAAGATGATAGATACAGACAACAGTGGCCAAATCACTTTTGAAGAACTCAAGGCTGGATTAAAAAGAGTTGGTGCTAATCTTAAAGAGTCTGAAATTTATGATTTAATGCATGCAGCTGATGTTGATAACAATGGAACCATTGATTATGGGGAGTTCATAGCTGCCACACTACATCTAAACAAAGTTGAGAGAGAAGATCATTTATTTGCAGCTTTTTCCTACTTTGATAAGGATGGAAGTGGCTACATAACCCCAGATGAGCTTCAACAAGCCTGCGAAGAGTTTGGCTTAGAGGATGTCCGCCTGGAAGAAATGATCCGAGAAGTTGATCAGGACAATGATGGACGCATAGATTACAATGAGTTTGTGGCCATGATGCAAAAGGGAAATCCAGGCATTGGGAAGAAGGGCCTGCAAACCAGTTTCAGTATGGGGTTTAGAGAGGCGTTAAAACATTAG 1710 0.4404 MGNTCVGPSISKNGFFQSVSAAMWRSRAPEGSASYTNGETMDEPQATTKEPGSPLPVQNKPPEQMTIPKEEQPTKPKKPHQIKRVSSAGLRIESVLQTKTGNFKEFFILGRKLGQGQFGTTFLCVQKATRKEYACKSIAKRKLLTDEDVEDVRREIQIMHHLAGHPNVISIEGAYEDAVAVHVVMELCKGGELFDRIIQHGHYTERKAAELTRTIVGVVEACHSLGVMHRDLKPENFLLVNEEEDSLLKTIDFGLSVFFKPGEKFTDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAETEQGIFEQVLHGDLDFSSDPWPSISESAKDLVRRMLVRDPRRRLTAHEVLCHPWVQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAENLSEEEIAGLKEMFKMIDTDNSGQITFEELKAGLKRVGANLKESEIYDLMHAADVDNNGTIDYGEFIAATLHLNKVEREDHLFAAFSYFDKDGSGYITPDELQQACEEFGLEDVRLEEMIREVDQDNDGRIDYNEFVAMMQKGNPGIGKKGLQTSFSMGFREALKH* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0995 569 MobiDBLite consensus disorder prediction 30 54 - -
Vvi13g0995 569 ProSiteProfiles Protein kinase domain profile. 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0995 569 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Vvi13g0995 569 SMART serkin_6 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0995 569 CDD STKc_CAMK 106 364 - -
Vvi13g0995 569 SUPERFAMILY Protein kinase-like (PK-like) 107 366 IPR011009 -
Vvi13g0995 569 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Vvi13g0995 569 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Vvi13g0995 569 MobiDBLite consensus disorder prediction 26 84 - -
Vvi13g0995 569 SMART efh_1 448 476 IPR002048 GO:0005509
Vvi13g0995 569 SMART efh_1 412 440 IPR002048 GO:0005509
Vvi13g0995 569 SMART efh_1 484 512 IPR002048 GO:0005509
Vvi13g0995 569 SMART efh_1 518 546 IPR002048 GO:0005509
Vvi13g0995 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vvi13g0995 569 Pfam Protein kinase domain 110 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0995 569 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Vvi13g0995 569 ProSiteProfiles EF-hand calcium-binding domain profile. 518 549 IPR002048 GO:0005509
Vvi13g0995 569 ProSitePatterns EF-hand calcium-binding domain. 527 539 IPR018247 -
Vvi13g0995 569 FunFam Calcium-dependent protein kinase SK5 193 377 - -
Vvi13g0995 569 SUPERFAMILY EF-hand 404 544 IPR011992 -
Vvi13g0995 569 FunFam Calcium-dependent protein kinase 1 373 547 - -
Vvi13g0995 569 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Vvi13g0995 569 Gene3D - 390 548 - -
Vvi13g0995 569 CDD EFh 484 544 IPR002048 GO:0005509
Vvi13g0995 569 Gene3D Transferase(Phosphotransferase) domain 1 193 389 - -
Vvi13g0995 569 Gene3D Phosphorylase Kinase; domain 1 108 192 - -
Vvi13g0995 569 FunFam Calcium-dependent protein kinase 1 109 192 - -
Vvi13g0995 569 ProSitePatterns Protein kinases ATP-binding region signature. 113 140 IPR017441 GO:0005524
Vvi13g0995 569 PANTHER SERINE/THREONINE-PROTEIN KINASE 98 539 - -
Vvi13g0995 569 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Vvi13g0995 569 Pfam EF-hand domain pair 413 473 IPR002048 GO:0005509
Vvi13g0995 569 Pfam EF-hand domain pair 483 544 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0995 Vvi-Chr13 14945478 14952129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0995 1 564 EF-hand Containing Proteins AT5G04870 77.325 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi13g0995 Pkinase 4.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0995 K13412 - vvi:100249224 1129.39