Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0980 ATGTGGGGGCCTTTGCCCACTGTAACTGGTAATTTGTCTTCATTGGAAATACTCAATCTTACTTCCAATTACTTCAATGCCACCATCCCTGTACAAGTATCATCTCTGAAGAACCTCCAAACGCTAGTACTAGAGGGTAACATGTTCACTGGTACTGTTCCTGATTGGCTGAGTTCACTCCCACTCTTGGCTGTTCTGAGTCTCAAGAACAATTCCTTTCATGGGACTCTTCCGGATTCTTTGTCAAATTTGAGAAACATCAGGATTCTTGACCTTTCAATGAATCATTTATCTGGACAAGTGCCCGATCTTCGGAACTTGACCAACCTTCAAGTTCTTGATATACAAGATAATTTTTTTGGACCTCAATTTCCTAGTTTGCACACTAAGTTGGTTGCCCTGGTACTCAGAAACAATCAGTTCCACTCTGGTATTCCTGTTGAATTAAGCTACTATTATCAGCTGCAAAAACTGGACATCTCTTTCAACGGATTTGTGGGACCATTTTTGCCATCACTGCTGTCCCTGCCTTCAATCACTTATCTAGATGTAGCAAAGAATAGATTCACTGGAATGCTTTTCCCAAACATGTCTTGCAATCCCCAACTTGCTCTAGTGAATTTGTCCTCAAATCTTTTGACTGGGGACTTACCTCCTTGCTTACAATCGGCTCCTAAGAGCCGGGTTGTGGTGTATGAGAGGAATTGTCTTTCCAGTGGAGATCAGGTGCAGCATCCTTATTCCTTTTGCAGAATTGAAGCTATGGCTGTGAAAATCTTGCCTCATATGCACAAGGAAGAGAGAAGACCATTTTCCATAGCAGTCCTTGCATCAATCATAGTGGGAGTGATTGTTGGAGTAGTTGCACTCGTTGGGTTAGTTTTTTTGGTCATTAGAAGATTAAATGCTCAGAACACGGCAAAGACACCCGCAACAAGATTACCATCTGAGCAATTCTCAACTGTAGATGCAGCAAAACTGATTTTCGATGCAAGAAATATATCACAAACAATGAAGCTTGGAGCTCTTGGTCTTCCTGCTTATCGAACCTTTTTCCTGGAGGAGCTTAAGGAGGCTACCAATAACTTTGATGAATCAAGTCTGATTGAAGGTTCTCATGGTCAGATATACAAAGGTAAGCTCACCGATGGCACTATTGTTGCTATAAGAAGCTTGCAAATGAGAAGGCGCCAACGAAGCCAATCATATATGCACCACATTGAGCTGATTTCAAAGCTTAGACACAGCCATTTGGTTAGTGCACTTGGACACTGCTTTGAGTGCTTTCCAGATGATTCATGCGTCAGCAGAATATTTCTTATAACTGAGTCCATACCAAATGGGACACTAAGGGGCTGCATCTCTGGAAATCGAAGACAAAGGCTTAATTGGACACAAAGGATAGCAGCTGCCATTGGAGTTGTGAAGGGTATTCAGTTTCTTCATACTGGGATTGTGCCTGGTTTATTTTCAAACAATCTGAAAATAACAGATGTTTTGTTGGATCATAATCTTCACGTCAAAATCAGCAGTTATAACCTCCCTTTGTTAGCCGAAAGTAGGGAACAGGTTGGTGTTGGTGTTTCTTCTTCTGGACTAAAAGGAAATGCACAGGCAAGGGGCAAAGATGGGGATAAGAATGATGTCTATGACTTAGGAGTAATATTACTCGAAATCATTGTTGGAAGGCCAATCACTTCCAAAAATGATGTAGTTGTTGCAAGGGATCTTTTAATAGTAGGCATGAAAGCTGATGACATAGCCCGAAAGACTATAATGGATCCTGCAGTTGGTAAGGAGTGGTCAGGTGAATCAATCAAGACGCTGATGGAGATCTGCATCAGATGTCTGCACAATGAACCAAGTGAGAGGCCTTCAGTTGAGGATGTCCTTTGGAACTTACAGTTTGCAGCTCAGGTTCAGGATTCATGGAGGGGAGAACCCCAGAGCAATCTTCAGTCACCTGACTTGTCTTCACAATGA 1983 0.4211 MWGPLPTVTGNLSSLEILNLTSNYFNATIPVQVSSLKNLQTLVLEGNMFTGTVPDWLSSLPLLAVLSLKNNSFHGTLPDSLSNLRNIRILDLSMNHLSGQVPDLRNLTNLQVLDIQDNFFGPQFPSLHTKLVALVLRNNQFHSGIPVELSYYYQLQKLDISFNGFVGPFLPSLLSLPSITYLDVAKNRFTGMLFPNMSCNPQLALVNLSSNLLTGDLPPCLQSAPKSRVVVYERNCLSSGDQVQHPYSFCRIEAMAVKILPHMHKEERRPFSIAVLASIIVGVIVGVVALVGLVFLVIRRLNAQNTAKTPATRLPSEQFSTVDAAKLIFDARNISQTMKLGALGLPAYRTFFLEELKEATNNFDESSLIEGSHGQIYKGKLTDGTIVAIRSLQMRRRQRSQSYMHHIELISKLRHSHLVSALGHCFECFPDDSCVSRIFLITESIPNGTLRGCISGNRRQRLNWTQRIAAAIGVVKGIQFLHTGIVPGLFSNNLKITDVLLDHNLHVKISSYNLPLLAESREQVGVGVSSSGLKGNAQARGKDGDKNDVYDLGVILLEIIVGRPITSKNDVVVARDLLIVGMKADDIARKTIMDPAVGKEWSGESIKTLMEICIRCLHNEPSERPSVEDVLWNLQFAAQVQDSWRGEPQSNLQSPDLSSQ* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0980 660 Gene3D Transferase(Phosphotransferase) domain 1 445 651 - -
Vvi13g0980 660 ProSiteProfiles Leucine-rich repeat profile. 86 108 IPR001611 GO:0005515
Vvi13g0980 660 Pfam Leucine rich repeat 38 97 IPR001611 GO:0005515
Vvi13g0980 660 SUPERFAMILY L domain-like 4 238 - -
Vvi13g0980 660 Pfam Protein tyrosine and serine/threonine kinase 367 631 IPR001245 GO:0004672|GO:0006468
Vvi13g0980 660 Gene3D Phosphorylase Kinase; domain 1 326 429 - -
Vvi13g0980 660 ProSiteProfiles Protein kinase domain profile. 362 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0980 660 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 336 444 - -
Vvi13g0980 660 Gene3D Ribonuclease Inhibitor 104 260 IPR032675 -
Vvi13g0980 660 Gene3D Ribonuclease Inhibitor 1 103 IPR032675 -
Vvi13g0980 660 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 276 643 - -
Vvi13g0980 660 SUPERFAMILY Protein kinase-like (PK-like) 346 636 IPR011009 -
Vvi13g0980 660 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 445 650 - -
Vvi13g0980 660 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 128 246 - -
Vvi13g0980 660 FunFam Piriformospora indica-insensitive protein 2 5 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0980 Vvi-Chr13 14535259 14540458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0980 1 655 Miscellaneous Gene Families AT3G03770 55.976 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vvi13g0980 PK_Tyr_Ser-Thr 1.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0980 - - vvi:100266233 1219.53