Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0976 ATGTTTGGTAGGGCTCCCAAGAAAAGCGATAACACTAAGTACTATGATGTTCTTGGAGTTTCCAAGAACGCTTCGCAGGAAGATCTGAAGAAGGCGTATAGGAAGGCGGCGATCAAGAACCACCCTGACAAGGGTGGTGACCCGGAGAAGTTTAAAGAGTTGGCACAAGCTTATGAGGTATTGAGCGACCCGGAGAAGCGGGAGATATATGATCAATACGGAGAAGATGCTCTGAAAGAAGGAATGGGTGGTGGCGGTGGCGGCCATGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCCACCCCCTTAAGGTTTCTCTGGAAGATCTCTACAATGGGACATCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATCTGGGATGAAAGTTTCTATTAGACACCTTGGCCCCTCTATGATCCAGCAAATGCAACATCCTTGCAATGAGTGTAAAGGTACAGGTGAGACCATTAATGACAAGGATCGATGCCCACAGTGTAAGGGTGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCATCCTAAGTTCAAGCGTAAGGGTGATGACTTGTTTGTTGAGCACACCTTATCCCTGACCGAGGCACTCTGTGGATTTCAATTTATACTGACTCATTTGGATGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCATTCATGAAGGGGAAATTGTACATTCACTTTGCAGTGGATTTCCCTGACTCCCTGAACACGGATCAGTGCAAAGCTCTTGAAGCAGTGCTGCCTCCGAGGACTTCAACACAGTTGACTGATATGGAGATTGATGAGTGTGAGGAGACTACCTTGCATGATGTCAACATTGAGGAGGAGATGCGGAGGAAGCAGGCCGCCCAGGAGGCATATGAAGAGGATGAGGATATTCATGGTGGTGCTCAGAGGGTGCAGTGTGCCCAGCAATAA 1251 0.4796 MFGRAPKKSDNTKYYDVLGVSKNASQEDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGNPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICSKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFILTHLDGRQLLIKSHPGEVVKPDQFKAINDEGMPIYQKPFMKGKLYIHFAVDFPDSLNTDQCKALEAVLPPRTSTQLTDMEIDECEETTLHDVNIEEEMRRKQAAQEAYEEDEDIHGGAQRVQCAQQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0976 416 CDD DnaJ 14 63 IPR001623 -
Vvi13g0976 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Vvi13g0976 416 FunFam DnaJ subfamily A member 2 262 344 - -
Vvi13g0976 416 Pfam DnaJ domain 13 71 IPR001623 -
Vvi13g0976 416 Gene3D - 262 344 - -
Vvi13g0976 416 FunFam dnaJ protein homolog 10 109 - -
Vvi13g0976 416 FunFam Chaperone protein dnaJ 3 215 255 - -
Vvi13g0976 416 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 398 IPR044713 GO:0006457|GO:0030544
Vvi13g0976 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 354 IPR008971 GO:0006457|GO:0051082
Vvi13g0976 416 Hamap Chaperone protein DnaJ [dnaJ]. 10 391 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi13g0976 416 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vvi13g0976 416 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Vvi13g0976 416 Coils Coil 384 404 - -
Vvi13g0976 416 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Vvi13g0976 416 Gene3D - 148 214 - -
Vvi13g0976 416 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Vvi13g0976 416 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Vvi13g0976 416 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Vvi13g0976 416 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Vvi13g0976 416 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Vvi13g0976 416 FunFam DnaJ subfamily A member 2 148 214 - -
Vvi13g0976 416 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vvi13g0976 416 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vvi13g0976 416 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vvi13g0976 416 MobiDBLite consensus disorder prediction 390 407 - -
Vvi13g0976 416 Gene3D - 110 260 - -
Vvi13g0976 416 MobiDBLite consensus disorder prediction 390 416 - -
Vvi13g0976 416 CDD DnaJ_C 119 346 - -
Vvi13g0976 416 Gene3D DnaJ domain 10 109 IPR036869 -
Vvi13g0976 416 SMART dnaj_3 12 66 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0976 Vvi-Chr13 14441555 14443835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0976 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 2.71e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0976 K09503 - vvi:100233131 757.288