Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0970 ATGAAAAGAGGAAGCACGTTGTCGGAAAGTGGCTCACGCGCCCTCACACGCTGGTCGGAAAAACGCGTGTGGCTGGCGCGTGGGTGGTTTTCTGGCTCCGGAATGTTGCTTGATGACCTGATTGTTGCTGAAAATTGTCATGCTGCTGAAACAACAAATGATGCTTCTCCTGCTGCAGCAACCACAACAACTGTTGCAGCTGCCAAGCAAACTGGAAGATTACCTGGAATGTGTGCTGGTGTGGACACAAATGTTGAGTACTTGGTTGAAGCCTCAGCAGCTGAAGCTGAGACCATTAGTGCTGCAATAGCAGCTGCAAAAGCAAGGAAAATTAATGGAGATGTTGAACAAATACAGGACAGCGATGATGGGGTAAAGGCTGTCCCAACTGGGAAACAGAACTCCACTTTGATCATGCCTGAATCAGCTATGTTGAGCAGCATTCCACATGGAGTCCGGTTGCATCACAGAGCTGTTGTGGTAGCTGCAGAAACGGGCAGTGCTTTGGATTGTATGGTTAGACAGCTTTCAATTGACCAGTTTGAAAATGAAGGTAGGCGTGTCTGTTGTGGTACTGCAGAGAATGCAACTGCTGCTAGGAAATTATTTGATCGGAAAATGTCTATCAATACCGTGCCTAAGAAGGTGATTGCACAGCTTCTGAAGCCTCGTGGGTGGAAGCCTCCTGTCTGCAGGCAATTTTTCTTGGACTGCAATGAAATAGGAGATCTTTGTGATACTGCAGAACACATATTTTCAAATGAACCAAGTGTTTTGGTTGTTAAAGCTCCTGTCAAGATATTTGGTGACTTGCACGGGCAATTTGGGGACCTAATGCGCTTGTTTGATGAATATGGGTCTCCTTCAACTGCTGGAGACATCGCTTATGTCGATTATCTCTTCCTGGGAGATTATGTTGATAGGGGTCAGCATAGTCTGGAAACTATTGTGCTTCTACTTGCTTTGAAGGTTGAATATCTGCACAATATACATTTGATTCGTGGAAATCATGAGGCAGCAGATATTAATGCCCTCTTTGGCTTCCGGATTGAGTGTATTGAACGCCTGGGTGAGCGAGATGGTATTTGGGCTTGGCATCGGTTCAACCGATTATTTAATTGGCTTCCTCTAGCTGCGTTAATTGAAAAGAAAATTATCTGCATGCATGGTGGCATTGGTCGGTCTATAAATCATGTGGAACAGATTGAGAACCTTCAACGTCCAGTTGCAATGGAAGCAGGCTCGGTTGTTCTTATGGACCTGTTATGGTCTGACCCAACAGAAAATGATAGTGTGGAGGGACTGCGACCAAATGCTAGAGGCCCTGGTCTGGTTTCATTTGGGTTTATCCATGAATCAATCCTGGGAAACCTTTCAGTGACCGTGTTTCATTCTGGTCACCTTTCCCATCTCCTTAAGCTTTCCGATCAACTGTATCGCCGTCAGAAAAATCTCACCGCCGACGACTTTTTCCGGCGAAGTCCTTTTCCGACACCGACCATACCATCAGGTGCACAAGGAGGAGATCCTCAAGTTTTGTCAAAGCACTGGATGAAGATTCTCAGTCACGCGCCGGCCACACGCGTTCCTTCTCCGGCGGCCTGA 1605 0.466 MKRGSTLSESGSRALTRWSEKRVWLARGWFSGSGMLLDDLIVAENCHAAETTNDASPAAATTTTVAAAKQTGRLPGMCAGVDTNVEYLVEASAAEAETISAAIAAAKARKINGDVEQIQDSDDGVKAVPTGKQNSTLIMPESAMLSSIPHGVRLHHRAVVVAAETGSALDCMVRQLSIDQFENEGRRVCCGTAENATAARKLFDRKMSINTVPKKVIAQLLKPRGWKPPVCRQFFLDCNEIGDLCDTAEHIFSNEPSVLVVKAPVKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYVDYLFLGDYVDRGQHSLETIVLLLALKVEYLHNIHLIRGNHEAADINALFGFRIECIERLGERDGIWAWHRFNRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPVAMEAGSVVLMDLLWSDPTENDSVEGLRPNARGPGLVSFGFIHESILGNLSVTVFHSGHLSHLLKLSDQLYRRQKNLTADDFFRRSPFPTPTIPSGAQGGDPQVLSKHWMKILSHAPATRVPSPAA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0970 534 PRINTS Serine/threonine phosphatase family signature 400 427 IPR006186 GO:0016787
Vvi13g0970 534 PRINTS Serine/threonine phosphatase family signature 264 291 IPR006186 GO:0016787
Vvi13g0970 534 PRINTS Serine/threonine phosphatase family signature 299 326 IPR006186 GO:0016787
Vvi13g0970 534 PRINTS Serine/threonine phosphatase family signature 332 356 IPR006186 GO:0016787
Vvi13g0970 534 PRINTS Serine/threonine phosphatase family signature 370 396 IPR006186 GO:0016787
Vvi13g0970 534 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 82 448 - -
Vvi13g0970 534 Pfam Calcineurin-like phosphoesterase 264 444 IPR004843 GO:0016787
Vvi13g0970 534 Gene3D - 195 467 IPR029052 -
Vvi13g0970 534 ProSitePatterns Serine/threonine specific protein phosphatases signature. 333 338 IPR006186 GO:0016787
Vvi13g0970 534 SUPERFAMILY Metallo-dependent phosphatases 225 478 IPR029052 -
Vvi13g0970 534 SMART pp2a_7 236 483 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0970 Vvi-Chr13 14298856 14333341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0970 228 445 Calmodulin-binding Proteins AT5G63870 29.528 1.28e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0970 - - vvi:100245661 756.518