Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0965 ATGTTAGCATTCTCCCCTCCATTGTTTCCAACCCTTGGATGGCCCTTGGAGGATCCCATAAGCCATGCACAGAACTACATATATGGAGAAACAGAAACTTCAGAATCGTTTCTTCACTTGCCCTCATCTCAGCCACAAGTGGAACTCAATTGCTCCACCCCATATGCAGCAGTTAGTGGTAATCCCACGATGGTTAAGAAACTTAACCACAACGTCAGTGTGCGGGATCGTCGGAAGAAGATCAACAGCTTGTACTCCTCTCTGCGTTCACTACTTCCATCAGCTGATCAAGTGGTACTAAGAGCATGTTTGACAGTGATTCTAGAAAGCGGTACTAAGTTTTGTAGGCCTTTAAGACATAGTTTTCACAATTTTGTGGTGTTTTTGCAGAAGAAATTAAGCATTCCTTCGACAGTTTCATGTGTGCTAAAATACATACCAGAGCTGCAACGGCAAGTGGAGAGACTGATCCAAAAGAAAGAAGAGTTTTTATCAAAGATTTCTAGGGAAGGAGATCTAATTCACCTAGAAAATCAAAGAAATGGCACACTTGGAAGCTCTTTATCTGCTGTTTCAGCAAGAAGGCTTAGTGACAGGGAAATTGTGGTTCAGATATCCACATTTAAGGTCCATGAGAGTCCACTTTCTGAGGTTTTGTTAAATTTGGAGGAGGATGGGCTTCTTGTAATCAATGCATCATCTTTTGAGTCCTTTGGAGGGAGGGTCTTCTACAACTTACATCTTCAGAGGCCGAGATCGAGCTTGATGTGGACTTCAAGTGTGCTCTAG 789 0.4271 MLAFSPPLFPTLGWPLEDPISHAQNYIYGETETSESFLHLPSSQPQVELNCSTPYAAVSGNPTMVKKLNHNVSVRDRRKKINSLYSSLRSLLPSADQVVLRACLTVILESGTKFCRPLRHSFHNFVVFLQKKLSIPSTVSCVLKYIPELQRQVERLIQKKEEFLSKISREGDLIHLENQRNGTLGSSLSAVSARRLSDREIVVQISTFKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQRPRSSLMWTSSVL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0965 262 Pfam Helix-loop-helix DNA-binding domain 66 150 IPR011598 GO:0046983
Vvi13g0965 262 Coils Coil 146 166 - -
Vvi13g0965 262 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 63 249 - -
Vvi13g0965 262 Gene3D - 60 179 IPR036638 GO:0046983
Vvi13g0965 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 149 IPR011598 GO:0046983
Vvi13g0965 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 166 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0965 Vvi-Chr13 14128048 14129840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0965 1 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.634 4.77e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi13g0965 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0965 - - vvi:100252974 391.734