LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g0948	ATGGGCGTAGCAGTAGGCATGGATGCGCTGAGTGAGAGAGCGGCGATGATGAGAGAGTCAGTGCAGAAGAGCCAGACCATCAGCGACAGCATCGTCTCCATTCTCGGCTCCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGAAGGCTGCCGAGGTTATATTGGCTCAATTCGACCTTTATCGTCAGGCAGAGGGTAAAGTACTCAGAGGGCCACAGGAGGACCTAGAAAGTTACTTGGAATCTATTGATCAGCTAAGAAGCAATATTCGTTTTTTTAGCAGCAACAAAAGCTTCAAGAGTAATGATGGGGTGGTCAACCATGCAAATAATTTACTTGCCAAGGCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGACCCTCCTCAGGATCTCCAGGAAACCAGGCTGACTCTAGCATTAAGGCTCTGTCCAACAATCATTCTGAGCACCAGAACAGTAACTTAGAAACTGCTGTTTATACACCTCCAACTCTTATACCACCTAGGGTTCTGCCATTGCTGCATGATTTAGCCCAACAAATGGTTCAAGCGGGGCACCAACAGCAGTTACTGAAGATTTACAGGGACACCCGTTCTTCAGTTTTTGAAGAAAGCCTCCGCAAATTGGGTGTGGAAAAGCTTAGCAAAGATGATGTTCAGAAGATGCAATGGGAGGTTTTGGAGGCTAAGATTGGGAATTGGATTCATTTCATGCGGATTGCTGTTAAACTATTGTTTGCTGGGGAACGAAAAGTTTGTGATCAAATATTTCAAGGCTTTGATTCACTCAGTGATCAGTGTTTTGCTGAAGTTACTGCAAGTAGTGTTTCGGTGCTACTTAGTTTTGGTGAGGCTATTGCTAGAAGCAAGAGATCCCCAGAAAAATTATTTGTGCTTCTAGACATGTATGAGATAATGCGGGAACTTCACTCAGAGATAGAAACAATTTTCAAGGGCAAAGCTTGCACTGAAATTAGAGAATCTGCATTGGGTTTGACAAAGCGGCTGGCCCAGACTGCTCAAGAAACCTTTGGTGATTTTGAAGAAGCAGTTGAAAAAGATGCAACAAAAACTGCTGTGTCTGATGGAACTGTTCATCCTTTGACAAGCTATGTGATCAACTATGTGAAGTTTCTTTTTGACTATCAATCAACACTGAAGCAACTCTTTCAAGAATTCGAAAACGAAAAAGAAACGACTTCTCAGTTAGCATCAGTAACAATGCGAATAATGCATGCTCTTCAAACCAATTTGGATGGGAAATCTAAGCAGTATAAAGATCCTGCTTTGACTCACTTATTTCTTATGAACAATATTCACTACATGGTCCGATCTGTGCGTAGGTCTGAAGCCAAAGATTTATTAGGGGATGATTGGGTGCAAAGACATCGAAGGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGTACAGTCGGTACTGATGGTGGAAATAGTAGTGGAGTTTCAAGGGCAATGGTTAAAGACAGGTTCAAGACATTTAATATGCAGTTTGAGGAGCTGCATCAGAAACAATCTCAGTGGACAGTTCCTGACACTGAGCTGCGAGAGTCTCTGAGGCTTGCAGTTGCTGAAGTGTTGTTACCAGCGTACAGAAATTTCATTAAACGTTTTGGGCCACTGGTTGAGAGTGGGAAGAATCCCCAGAAGTACATTCGATTCACAGCAGAGGATCTGGAACGGATGCTGGGTGAATTTTTTGAGGGTAGAACCTTGAATGAAGCCAAGCGATAA	1944	0.4393	MGVAVGMDALSERAAMMRESVQKSQTISDSIVSILGSFDHRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAEVILAQFDLYRQAEGKVLRGPQEDLESYLESIDQLRSNIRFFSSNKSFKSNDGVVNHANNLLAKAISKLEEEFKQLLSSYSKPVEPDRLFDGLPNSLRPSSGSPGNQADSSIKALSNNHSEHQNSNLETAVYTPPTLIPPRVLPLLHDLAQQMVQAGHQQQLLKIYRDTRSSVFEESLRKLGVEKLSKDDVQKMQWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFQGFDSLSDQCFAEVTASSVSVLLSFGEAIARSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACTEIRESALGLTKRLAQTAQETFGDFEEAVEKDATKTAVSDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENEKETTSQLASVTMRIMHALQTNLDGKSKQYKDPALTHLFLMNNIHYMVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRNAWAKCLTIQALTSSGGGSTVGTDGGNSSGVSRAMVKDRFKTFNMQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRNFIKRFGPLVESGKNPQKYIRFTAEDLERMLGEFFEGRTLNEAKR*	648

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g0948	647	SUPERFAMILY	Cullin repeat-like	76	638	IPR016159	-
	Vvi13g0948	647	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	57	639	IPR004140	GO:0000145\|GO:0006887
	Vvi13g0948	647	MobiDBLite	consensus disorder prediction	161	185	-	-
	Vvi13g0948	647	Gene3D	Exocyst complex component Exo70	74	647	-	-
	Vvi13g0948	647	Coils	Coil	132	152	-	-
	Vvi13g0948	647	Pfam	Exo70 exocyst complex subunit	278	634	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vvi13g0948	647	MobiDBLite	consensus disorder prediction	169	185	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g0948	Vvi-Chr13	13478741	13512004	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g0948	1	647	EXO70 exocyst subunit family	AT5G03540	77.548	0.0	1040

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g0948	K07195		-	vvi:100253247	1238.4

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