Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0934 ATGGGATCTGAAACAGCACTTCCCAAATGGGCATCAGAGCCTTGCATGATGGGCATTGATGAAGCTGGACGTGGCCCTGTCTTAGGCCCAATGGTTTATGGATGCTTGTACTGTGCCCGCTCATACCACAACACCCTTTCTACATTGAACTTTGCAGATTCAAAGACTCTAAAAGAAGAGAAGAGGGAGGAATTGTTTGAAAATTTAAAGGCTGATGAATCCATTGGATGGGCTGTTGATGTCATAGATCCATGGGAGCTCTCAGCTAAAATGCTAAAGAAAAACAAGATAAATCTAAATGAAATATCTCATGACTCTGCAATTGGCCTCATCACTAGGGTCCTAAACATGGGAGTTCTTTTAACTGAGGTTTACGTGGACACAGTGGGAGATGCAGAGAAGTATAGGATTAAACTGTCTGAAAGATTTCCTGCTGTCAAATTTGTTGTTGCAAAGAAAGCTGATAGTCTTTATCCTGTTGTAAGTGGAGCAAGCATAGTTGCAAAGGTGACAAGAGACCGAGCCCTACGAGATTGGGTGCTGGTTGAAACTGCTGAAAATATGCATAGGAACTTTGGATCTGGATATCCTGGAGATCCTGTAACTAAGTCCTGGTTGCAACATCACAAACACTCGGTATTTGGATTTCCGACTCTGGTTCGTTTCAGTTGGGGTACGTGCACTGCCTACTCCAAAGACATTGTTGAAGTACTATGTATGGTGGTCTATGCTTTCATGTACTAA 744 0.4274 MGSETALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLCMVVYAFMY* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0934 247 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Vvi13g0934 247 Gene3D - 3 186 IPR036397 GO:0003676
Vvi13g0934 247 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Vvi13g0934 247 FunFam Ribonuclease 188 234 - -
Vvi13g0934 247 FunFam Ribonuclease 2 186 - -
Vvi13g0934 247 NCBIfam ribonuclease HII 16 228 IPR004649 GO:0004523|GO:0016070
Vvi13g0934 247 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 238 IPR001352 GO:0003723|GO:0004523
Vvi13g0934 247 SUPERFAMILY Ribonuclease H-like 15 230 IPR012337 -
Vvi13g0934 247 CDD RNase_HII_eukaryota_like 17 236 - -
Vvi13g0934 247 Gene3D Ribonuclease hii. Domain 2 187 233 IPR023160 GO:0004523
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0934 1 237 Core DNA Replication Machinery Family AT2G25100 70.042 3.36e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0934 K10743 - vvi:100260143 486.493