Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0884 ATGTGTAAATCAAGAGAGATCTCATTTACTACTGAAGCTTTCAAAAGGATGCGGAGACTTAGATTACTCAAAATTTATTGGAGTTGGGGTTTTCTTAATTATATGGGAAAAGGGTATCAAAAGCTCCTCCTTCCTAAAAACTTTCAATTTCATTCACATTATTTAAGATATCTTCATTGGGAAGGATACTCTTTGAAATCCTTGCCTTCAAATTTTGATGGAGAGAACCTCATTGAACTCAACTTGCAGCATAGCAATATAGAACACCTTTGGCAAGGGGAAAAGTATCTTGAAGAGTTGAAGATCTTGAATTTATCAGAATCTCAGCAGCTTAATGAAATCCCACACTTCTCAAATATGTCAAATCTGGAGCAACTAAATGTTAAAGGTTGTAGAAGTTTGGATAATGTTGACTCATCTGTTGGCTTCCTGAAGAAGCTTACTTTGTTAAATTTGAGAGGGTGCCAAAAGATTAGGAGCTTGCCAAGTACAATTCAAAACTTGGTCTCTCTTAAAAGTCTTTATATAGATGGTACTGCTATTGAAGAATTACCCTCCTCAATCTGTCATCTCACCTCACTTCAAGTTCTATCTATTAGTGAATGCAAAAACTTGAGGAGTCTTCCGAGCAGCATTTGTAGGTTGAAATACCTTGAAGAACTTAATCTCTATGATTGTTCAAACTTGGAGACTTTTCCGGAAATCATGGAGGATATGGAATGCTTAAAGTCGCTTGATTTAAGTGGAACGTGTATAAAAGAGCTTCCATCATCAATTGAGTTTCTAAAACATCTCGTTGATTTGCGGTTAGTGAAGTGTGAAAACTTGAGGAGTCTTCCGAGCAGCATTTGTAGGTTGAAATACCTTAAAGGACTTAATCTCTTTGATTGTCCAAACTTTGAGACTTTTCCGGAAATCATGGAGGATATGGAAAGCTTACAAGAGCTTGATTTAAGTGGAACGTGTATAAAAGAGCTTCCATCATCAATTGAGTTTCTAAAACATCTCGTTGATTTGCAGTTAGTGAAGTGTGAAAACTTAAGGAGCCTTCCGAGCAGCATTTGTAGGTTGAAATACCTTGAGAAACTTAATCTCTCCGATTGTTCAAACTTGGAGACTTTTCCTAAAATCATGGAGGATATGGAATGCTTAAAGTTGCTCGTTTTAAGTGGAACATGTATAAAAGAGCTTCCATCATCAATTGAGTTTCTAAAACATCTCACTGATTTGCGGTTAGTGAAGTGTGAAAACTTGAGGAGTCTTCCGAGCAGCATTTGTAGGTTGAAATACCTTGAAGAACTTAATCTCTATGATTGTTCAAACTTGGAGAATTTTCCGGAAATCATGGAGGATATGGAATGCTTATATTTGCTTAATTTAAGTGGAACGTGTATAAAAGAGCTTCCATCATCAATTGAGTTTCTAAAACATCTCACTTATTTGCGGTTAGTGAAGTGTGAAAACTTGAGGAGTCTTCCGAGTAGCATTTGTAGGTTGAAATACCTTGAAAAACTTGATCTCTATGATTGTTCAAACTTGGAGACTTTTCCGGAAATCATGGAGGATATGGAAAGCTTACAGGAGCTCGATTTAGGTGGAACGTGTATAAAAGAGCTTCCGTCATCAATTGGATATTTAAATCATCTTATTCATTTGCATTTGAGCCACTGCAAAAACTTGAGGAGCCTTCCAAGTAACATTGGTAGGTTGAAATTGCTTCAAAAAGTTTGTCTCGGTGGCTGTCCAAACCTAGTCACAGAGGGCATAGAAAATTTAATAAATCTTGGTTTATTAGAAACTCAATATCTGATGGATGGAGTAACCCTAAGTGATTTACGGTGCCTATCCTTGCTGAAAAGATTAGATCTAAGTCAAAACAATATGCGTCACATACCTACTGCTATTACTCAACTTTGTAATCTAAGGTGCCTTAATATCAGTCACTGCAAGATGCTTGAAGAAATTCCAGAGCTTCCATCAAGTCTAAGAGAGATAAATGCACATGATTGCCCAATCTTTGGAACTCTATCAAATCCATCAACTCTTCTCTGGTATTTTCTCCTCAAATGGTTCAAGAAAATTGAGCCTCCTTTGAAATGGAGAAGCATTAATCTAGGAAGTAATGGAATTCCAAGGTGGGTATTGCATCAGGAAATGGGCAGGCAAATAAGAATAGAGCTTCCTATGAATTGGTATGAAGATGACCACTTTCTTGGATTTGGATTTTTCTGTCTTCATTATCAATCAAACAAAATTTATTTATCTTTGAAATTTGATGAAGGAGAATATCCTTACCTTGCACTAGAAATTATCAAAAGTGAATGCGACGAGATTAATGATAGTGAATCAGATCAAGTGTTGCTAGTGTACTATCCTAAGATTTCTTTTAGGGACAACGAGTTCCACTCCAATCAATATATGCACCTTCAGGCTTCATTTGCTACATATGATAGGGAATCAAAAATCAAAAGTTGTGGGGTCCATCTTATATACTCTCAAGACAATCAACAGAACCATATCTTGCCGGTAGATTTTCTTGGCACCCAAGATGGTGAAGACAACAGATCAACAACAACAGCTATGAAGAGAAGCCGTGATGACACAGAACATAACCAAGCGGAGGAACCACACCATAAAAGATCGAGAGAACCCAATACCCATCTCAAGCTTTAA 2673 0.3681 MCKSREISFTTEAFKRMRRLRLLKIYWSWGFLNYMGKGYQKLLLPKNFQFHSHYLRYLHWEGYSLKSLPSNFDGENLIELNLQHSNIEHLWQGEKYLEELKILNLSESQQLNEIPHFSNMSNLEQLNVKGCRSLDNVDSSVGFLKKLTLLNLRGCQKIRSLPSTIQNLVSLKSLYIDGTAIEELPSSICHLTSLQVLSISECKNLRSLPSSICRLKYLEELNLYDCSNLETFPEIMEDMECLKSLDLSGTCIKELPSSIEFLKHLVDLRLVKCENLRSLPSSICRLKYLKGLNLFDCPNFETFPEIMEDMESLQELDLSGTCIKELPSSIEFLKHLVDLQLVKCENLRSLPSSICRLKYLEKLNLSDCSNLETFPKIMEDMECLKLLVLSGTCIKELPSSIEFLKHLTDLRLVKCENLRSLPSSICRLKYLEELNLYDCSNLENFPEIMEDMECLYLLNLSGTCIKELPSSIEFLKHLTYLRLVKCENLRSLPSSICRLKYLEKLDLYDCSNLETFPEIMEDMESLQELDLGGTCIKELPSSIGYLNHLIHLHLSHCKNLRSLPSNIGRLKLLQKVCLGGCPNLVTEGIENLINLGLLETQYLMDGVTLSDLRCLSLLKRLDLSQNNMRHIPTAITQLCNLRCLNISHCKMLEEIPELPSSLREINAHDCPIFGTLSNPSTLLWYFLLKWFKKIEPPLKWRSINLGSNGIPRWVLHQEMGRQIRIELPMNWYEDDHFLGFGFFCLHYQSNKIYLSLKFDEGEYPYLALEIIKSECDEINDSESDQVLLVYYPKISFRDNEFHSNQYMHLQASFATYDRESKIKSCGVHLIYSQDNQQNHILPVDFLGTQDGEDNRSTTTAMKRSRDDTEHNQAEEPHHKRSREPNTHLKL* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0884 890 SMART LRR_CC_2 428 458 IPR006553 -
Vvi13g0884 890 SMART LRR_CC_2 215 245 IPR006553 -
Vvi13g0884 890 SMART LRR_CC_2 499 529 IPR006553 -
Vvi13g0884 890 SMART LRR_CC_2 570 595 IPR006553 -
Vvi13g0884 890 SMART LRR_CC_2 144 171 IPR006553 -
Vvi13g0884 890 MobiDBLite consensus disorder prediction 846 890 - -
Vvi13g0884 890 Pfam Leucine Rich Repeat 76 95 IPR011713 -
Vvi13g0884 890 SUPERFAMILY L domain-like 11 372 - -
Vvi13g0884 890 Gene3D Ribonuclease Inhibitor 587 725 IPR032675 -
Vvi13g0884 890 SUPERFAMILY L domain-like 370 694 - -
Vvi13g0884 890 SMART LRR_typ_2 523 544 IPR003591 -
Vvi13g0884 890 SMART LRR_typ_2 168 191 IPR003591 -
Vvi13g0884 890 SMART LRR_typ_2 144 167 IPR003591 -
Vvi13g0884 890 SMART LRR_typ_2 381 404 IPR003591 -
Vvi13g0884 890 SMART LRR_typ_2 452 475 IPR003591 -
Vvi13g0884 890 SMART LRR_typ_2 615 638 IPR003591 -
Vvi13g0884 890 SMART LRR_typ_2 239 262 IPR003591 -
Vvi13g0884 890 SMART LRR_typ_2 310 333 IPR003591 -
Vvi13g0884 890 SMART LRR_typ_2 546 570 IPR003591 -
Vvi13g0884 890 ProSiteProfiles Leucine-rich repeat profile. 312 334 IPR001611 GO:0005515
Vvi13g0884 890 Gene3D Ribonuclease Inhibitor 304 440 IPR032675 -
Vvi13g0884 890 Gene3D Ribonuclease Inhibitor 441 586 IPR032675 -
Vvi13g0884 890 Gene3D Ribonuclease Inhibitor 1 303 IPR032675 -
Vvi13g0884 890 PANTHER LEUCINE-RICH REPEAT-CONTAINING 457 598 - -
Vvi13g0884 890 Pfam C-JID domain 707 835 IPR045344 -
Vvi13g0884 890 MobiDBLite consensus disorder prediction 856 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0884 Vvi-Chr13 11139174 11142112 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0884 405 636 WRKY Transcription Factor Family AT4G12020 37.354 1.93e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0884 - - vvi:100247603 1594.33