Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0882 ATGGGCGCTTTGACTTTTGTGGGAAACACGCCTTTCCCGCCAAGACACCCACCACTCCCAAATTTCCCGCCATATTTTGACTTACCATTTAAAAGCCCTGACATCGATCGATTTTTCCGTCGACAATTTGAAGATTTCAGAAGAAAAAGCTTGTGTTGGGATATGGATACATCAAGCCCTGCAGTGTTTGTCAACGCAGAGTTGTTGCGAACGTATGTAGGGCGGAAGGTTAGGGCTGTGGTTCAAGTTATTGGATTTGATGGAGGCGTTGTGACCGGAAAATCTGTGGATGACCAGCAATTGATTATTAAGGGCTCTCCCCCATCTGTTCCTGTGATGAACTATATTGAGGTGATTGGCATTGCTGACAGTAACCAGTCCATTCGCGCTGAAATATGGACTAACTTCGGTAGCACATTTGACACACATTCATACAATCAGTTATGCCTGCTTGCAAATGGGGAATTTAAAAGTCTGTTCCTGTAG 486 0.4465 MGALTFVGNTPFPPRHPPLPNFPPYFDLPFKSPDIDRFFRRQFEDFRRKSLCWDMDTSSPAVFVNAELLRTYVGRKVRAVVQVIGFDGGVVTGKSVDDQQLIIKGSPPSVPVMNYIEVIGIADSNQSIRAEIWTNFGSTFDTHSYNQLCLLANGEFKSLFL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0882 161 SUPERFAMILY Nucleic acid-binding proteins 59 160 IPR012340 -
Vvi13g0882 161 CDD RPA3 60 160 - -
Vvi13g0882 161 Gene3D - 55 161 IPR012340 -
Vvi13g0882 161 Pfam Replication factor A protein 3 55 155 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi13g0882 161 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 49 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0882 Vvi-Chr13 11113910 11118959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0882 55 161 Core DNA Replication Machinery Family AT4G18590 63.551 8.83e-47 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0882 K10740 - vvi:100244193 214.157