Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0881 ATGCATGGCCATGGTTTGAAACATGGATTGGAATTAGTTGTTGTCGTTATGCGTGACCCTAATGGAATTAGTAGAGGATCGGGTTTTGTTGCCTTCTCAACTGCAAAAGAAGCATCCCGAGTGCTTGCGGACATGAATGGTAAAATGGTTGCTAGCAAACCCCTTTATGTTGCACTTGCACAATGGAAAGAAGATAGGAGAACAAGGTTGCAGGCACAATTTTCGCAAATGCGTCCAACTGCAATGGCACCTTCAGTAGGCCCTCGAATGTCCATGTATCCCCCTGGTACTCCAGGTCTTGGACAACAACTATTCTATGGTCAAGGCCCCCAACTATTATCCCTCCCCAACCAGAATTTGGGTACTAGCACCACCTAG 378 0.4656 MHGHGLKHGLELVVVVMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQFSQMRPTAMAPSVGPRMSMYPPGTPGLGQQLFYGQGPQLLSLPNQNLGTSTT* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0881 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 55 IPR000504 GO:0003723
Vvi13g0881 125 FunFam - 7 81 - -
Vvi13g0881 125 Gene3D - 7 81 IPR012677 -
Vvi13g0881 125 SUPERFAMILY RNA-binding domain, RBD 14 84 IPR035979 GO:0003676
Vvi13g0881 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 62 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0881 Vvi-Chr13 11080390 11081183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0881 7 90 Eukaryotic Initiation Factors Gene Family AT1G49760 35.714 1.02e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0881 K13126 - vvi:100262903 183.726