Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0878 ATGGCGCCGAAGAAGGAAAAGGCTCCTCCACCGTCTTCGAAGCCCGCCAAATCTGGCGGAGGTAAACAGAAAAAGAAGAAATGGAGCAAAGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATCAAGGTACTTATGACAAGCTTCTCTCTGAAGTTCCTAAGTACAAGCTTATTACTCCATCGATCCTGTCCGACAGACTCAGGATTAATGGATCGCTAGCACGCAGGGCAATCAAGGATTTGATGGCAAGAGGTTCGATTAGGATGGTATCAGCTCATGCTAGCCAGCAGATATACACCAGGGCCACCAATCACTAG 327 0.4709 MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRMVSAHASQQIYTRATNH* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0878 108 MobiDBLite consensus disorder prediction 1 36 - -
Vvi13g0878 108 FunFam 40S ribosomal protein S25 21 108 - -
Vvi13g0878 108 PANTHER 40S RIBOSOMAL PROTEIN S25 1 107 IPR004977 -
Vvi13g0878 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
Vvi13g0878 108 Gene3D - 21 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0878 Vvi-Chr13 10988272 10990550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0878 1 107 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 89.720 1.90e-53 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0878 K02975 - vvi:100249356 163.696